Information for 9-CAGCCTKGCTTCM (Motif 19)

A G T C C G T A A C T G A T G C A G T C A C G T A C T G A C T G A G T C A C G T A C G T T G A C G T C A
Reverse Opposite:
A C G T A C T G C G T A C G T A A C T G A G T C G T A C C G T A A C T G A T C G A G T C A C G T A C T G
p-value:1e-8
log p-value:-1.863e+01
Information Content per bp:1.916
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif8.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets57.7 +/- 32.7bp
Average Position of motif in Background34.7 +/- 20.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.60
Offset:7
Orientation:forward strand
Alignment:CAGCCTKGCTTCM
-------GCTTCC
 A G T C C G T A A C T G A T G C A G T C A C G T A C T G A C T G A G T C A C G T A C G T T G A C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CAGCCTKGCTTCM
CAGCC--------
 A G T C C G T A A C T G A T G C A G T C A C G T A C T G A C T G A G T C A C G T A C G T T G A C G T C A
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTKGCTTCM-
SCAGYCADGCATGAC
 A C G T A G T C C G T A A C T G A T G C A G T C A C G T A C T G A C T G A G T C A C G T A C G T T G A C G T C A A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTKGCTTCM
BCAGACWA------
 A C G T A G T C C G T A A C T G A T G C A G T C A C G T A C T G A C T G A G T C A C G T A C G T T G A C G T C A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CAGCCTKGCTTCM--
GCAGCCAAGCGTGACN
 A C G T A G T C C G T A A C T G A T G C A G T C A C G T A C T G A C T G A G T C A C G T A C G T T G A C G T C A A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CAGCCTKGCTTCM
-GGTCTGGCAT--
 A G T C C G T A A C T G A T G C A G T C A C G T A C T G A C T G A G T C A C G T A C G T T G A C G T C A
A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:7
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----CAGCCTKGCTTCM
CCTTCCTTCCTTCCTTCC
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C A G T C A C G T A C T G A C T G A G T C A C G T A C G T T G A C G T C A
A G T C G A T C G A C T C A G T A T G C A G T C A C G T A C G T A T G C G T A C A G C T A G C T G A T C A G T C A G C T A G C T A G T C A G T C

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCTKGCTTCM
CACAGN---------
 A C G T A C G T A G T C C G T A A C T G A T G C A G T C A C G T A C T G A C T G A G T C A C G T A C G T T G A C G T C A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:9
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----CAGCCTKGCTTCM
AGCAACAGCCGCACC---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C A G T C A C G T A C T G A C T G A G T C A C G T A C G T T G A C G T C A
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C A C G T A C G T A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:10
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CAGCCTKGCTTCM--
TACCCTAGTTACCGA
 A G T C C G T A A C T G A T G C A G T C A C G T A C T G A C T G A G T C A C G T A C G T T G A C G T C A A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A