Information for 1-TATATARGGCGSG (Motif 1)

A G C T G C T A G C A T G C T A C G A T C T G A T C G A C T A G A T C G A T G C T A C G T A G C T A C G
Reverse Opposite:
A T G C A T C G A T G C T A C G T A G C G A T C A G C T G A C T G C T A C G A T C G T A C G A T T C G A
p-value:1e-28
log p-value:-6.601e+01
Information Content per bp:1.541
Number of Target Sequences with motif76.0
Percentage of Target Sequences with motif13.10%
Number of Background Sequences with motif1265.2
Percentage of Background Sequences with motif2.69%
Average Position of motif in Targets44.5 +/- 26.9bp
Average Position of motif in Background50.5 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBP/MA0108.2/Jaspar

Match Rank:1
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-TATATARGGCGSG-
GTATAAAAGGCGGGG
 A C G T A G C T G C T A G C A T G C T A C G A T C T G A T C G A C T A G A T C G A T G C T A C G T A G C T A C G A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-TATATARGGCGSG-
GTATAAAAGGCGGGG
 A C G T A G C T G C T A G C A T G C T A C G A T C T G A T C G A C T A G A T C G A T G C T A C G T A G C T A C G A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---TATATARGGCGSG
GNCTATAAAAGG----
 A C G T A C G T A C G T A G C T G C T A G C A T G C T A C G A T C T G A T C G A C T A G A T C G A T G C T A C G T A G C T A C G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T A C G T

PB0080.1_Tbp_1/Jaspar

Match Rank:4
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------TATATARGGCGSG
NANTTATATATAANGN---
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C T A G C A T G C T A C G A T C T G A T C G A C T A G A T C G A T G C T A C G T A G C T A C G
A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TATATARGGCGSG
TTTTATKRGG----
 A C G T A G C T G C T A G C A T G C T A C G A T C T G A T C G A C T A G A T C G A T G C T A C G T A G C T A C G
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T A C G T A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TATATARGGCGSG
CCATATATGG----
 A C G T A G C T G C T A G C A T G C T A C G A T C T G A T C G A C T A G A T C G A T G C T A C G T A G C T A C G
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T A C G T A C G T A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TATATARGGCGSG--
TGCGCATAGGGGAGGAG
 A C G T A C G T A G C T G C T A G C A T G C T A C G A T C T G A T C G A C T A G A T C G A T G C T A C G T A G C T A C G A C G T A C G T
C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G

PB0163.1_Six6_2/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TATATARGGCGSG
ANNNGGATATATCCNNN-
 A C G T A C G T A C G T A C G T A C G T A G C T G C T A G C A T G C T A C G A T C T G A T C G A C T A G A T C G A T G C T A C G T A G C T A C G
G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T A C G T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TATATARGGCGSG
TNCCATATATGG----
 A C G T A C G T A C G T A G C T G C T A G C A T G C T A C G A T C T G A T C G A C T A G A T C G A T G C T A C G T A G C T A C G
C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G A C G T A C G T A C G T A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TATATARGGCGSG----
--ATAAAGGCGCGCGAT
 A G C T G C T A G C A T G C T A C G A T C T G A T C G A C T A G A T C G A T G C T A C G T A G C T A C G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T