Information for 18-GCCMGMRCCAGAS (Motif 34)

A C T G G T A C A G T C T G C A A T C G G T C A C T A G A G T C A G T C C G T A A C T G C T G A A T C G
Reverse Opposite:
A T G C A G C T A G T C C G A T A C T G A C T G A G T C A C G T A T G C A C G T A C T G A C T G A G T C
p-value:1e-7
log p-value:-1.769e+01
Information Content per bp:1.861
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.5 +/- 27.3bp
Average Position of motif in Background39.1 +/- 36.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCCMGMRCCAGAS------
--CAAATCCAGACATCACA
 A C T G G T A C A G T C T G C A A T C G G T C A C T A G A G T C A G T C C G T A A C T G C T G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GCCMGMRCCAGAS-
----ATGCCAGACN
 A C T G G T A C A G T C T G C A A T C G G T C A C T A G A G T C A G T C C G T A A C T G C T G A A T C G A C G T
A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:GCCMGMRCCAGAS--
-------CCAGACAG
 A C T G G T A C A G T C T G C A A T C G G T C A C T A G A G T C A G T C C G T A A C T G C T G A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:GCCMGMRCCAGAS----
-------CCAGACRSVB
 A C T G G T A C A G T C T G C A A T C G G T C A C T A G A G T C A G T C C G T A A C T G C T G A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCCMGMRCCAGAS
GCCACACCCA---
 A C T G G T A C A G T C T G C A A T C G G T C A C T A G A G T C A G T C C G T A A C T G C T G A A T C G
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCCMGMRCCAGAS
GAGSCCGAGC-----
 A C G T A C G T A C T G G T A C A G T C T G C A A T C G G T C A C T A G A G T C A G T C C G T A A C T G C T G A A T C G
A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T A C G T A C G T A C G T

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCCMGMRCCAGAS
GGCCACRCCCMK--
 A C G T A C T G G T A C A G T C T G C A A T C G G T C A C T A G A G T C A G T C C G T A A C T G C T G A A T C G
C T A G C T A G T G A C G T A C T G C A A G T C C T A G A G T C A G T C A G T C G T C A C A T G A C G T A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GCCMGMRCCAGAS
ATGCCCGGGCATGT-
 A C G T A C G T A C T G G T A C A G T C T G C A A T C G G T C A C T A G A G T C A G T C C G T A A C T G C T G A A T C G
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCCMGMRCCAGAS
GGCCACACCCAN--
 A C G T A C T G G T A C A G T C T G C A A T C G G T C A C T A G A G T C A G T C C G T A A C T G C T G A A T C G
C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GCCMGMRCCAGAS
AGCCTCAGGCA---
 A C G T A C T G G T A C A G T C T G C A A T C G G T C A C T A G A G T C A G T C C G T A A C T G C T G A A T C G
G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T A C G T A C G T