Information for 13-GCCAAGAAAAWRAGAC (Motif 29)

C T A G A G T C G T A C C T G A G T C A A T C G C T G A T C G A G T C A C G T A C G T A C T G A C T G A T A C G G T C A A G T C
Reverse Opposite:
C T A G C A G T A T G C A G C T A G C T C G A T A C G T A C G T A C G T A G C T A T G C A C G T A G C T A C T G C T A G A G T C
p-value:1e-8
log p-value:-2.063e+01
Information Content per bp:1.736
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.0 +/- 26.3bp
Average Position of motif in Background14.9 +/- 2.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAGAAAAWRAGAC
TGCCAAAATAAACANN-
 A C G T C T A G A G T C G T A C C T G A G T C A A T C G C T G A T C G A G T C A C G T A C G T A C T G A C T G A T A C G G T C A A G T C
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A A C G T

PB0093.1_Zfp105_1/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCCAAGAAAAWRAGAC
AACAAACAACAAGAG--
 A C G T C T A G A G T C G T A C C T G A G T C A A T C G C T G A T C G A G T C A C G T A C G T A C T G A C T G A T A C G G T C A A G T C
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCCAAGAAAAWRAGAC
-CCAATAAAAC-----
 C T A G A G T C G T A C C T G A G T C A A T C G C T G A T C G A G T C A C G T A C G T A C T G A C T G A T A C G G T C A A G T C
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCCAAGAAAAWRAGAC
AACCCAATAAAATTCG--
 A C G T A C G T C T A G A G T C G T A C C T G A G T C A A T C G C T G A T C G A G T C A C G T A C G T A C T G A C T G A T A C G G T C A A G T C
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G A C G T A C G T

FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCCAAGAAAAWRAGAC---
AGTAAACAAAAAAGAACANN
 A C G T C T A G A G T C G T A C C T G A G T C A A T C G C T G A T C G A G T C A C G T A C G T A C T G A C T G A T A C G G T C A A G T C A C G T A C G T A C G T
C G T A C T A G G A C T G T C A G T C A C G T A A G T C C G T A T C G A T C G A T C G A C G T A C T G A C T A G G C T A C G T A T A G C C G T A C G A T C G T A

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCCAAGAAAAWRAGAC
-CCAATAAAAA-----
 C T A G A G T C G T A C C T G A G T C A A T C G C T G A T C G A G T C A C G T A C G T A C T G A C T G A T A C G G T C A A G T C
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GCCAAGAAAAWRAGAC
-CCAATAAAAA-----
 C T A G A G T C G T A C C T G A G T C A A T C G C T G A T C G A G T C A C G T A C G T A C T G A C T G A T A C G G T C A A G T C
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GCCAAGAAAAWRAGAC
---AAAACAATGG---
 C T A G A G T C G T A C C T G A G T C A A T C G C T G A T C G A G T C A C G T A C G T A C T G A C T G A T A C G G T C A A G T C
A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GCCAAGAAAAWRAGAC
CGTGCCAAG----------
 A C G T A C G T A C G T C T A G A G T C G T A C C T G A G T C A A T C G C T G A T C G A G T C A C G T A C G T A C T G A C T G A T A C G G T C A A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAGAAAAWRAGAC
TGCCAA-----------
 A C G T C T A G A G T C G T A C C T G A G T C A A T C G C T G A T C G A G T C A C G T A C G T A C T G A C T G A T A C G G T C A A G T C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T