Information for 5-CGCCATTTTT (Motif 17)

T G A C A C T G A G T C A T G C G T C A A G C T A G C T A G C T A G C T G A C T
Reverse Opposite:
C T G A T C G A C T G A T C G A T C G A C A G T T A C G C T A G T G A C A C T G
p-value:1e-12
log p-value:-2.827e+01
Information Content per bp:1.668
Number of Target Sequences with motif67.0
Percentage of Target Sequences with motif11.04%
Number of Background Sequences with motif1946.4
Percentage of Background Sequences with motif4.11%
Average Position of motif in Targets53.4 +/- 25.4bp
Average Position of motif in Background51.9 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--CGCCATTTTT
GCNGCCATCTTG
 A C G T A C G T T G A C A C T G A G T C A T G C G T C A A G C T A G C T A G C T A G C T G A C T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---CGCCATTTTT
GTCCGCCATTA--
 A C G T A C G T A C G T T G A C A C T G A G T C A T G C G T C A A G C T A G C T A G C T A G C T G A C T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--CGCCATTTTT
GCCGCCATCTTG
 A C G T A C G T T G A C A C T G A G T C A T G C G T C A A G C T A G C T A G C T A G C T G A C T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

E2F3/MA0469.2/Jaspar

Match Rank:4
Score:0.72
Offset:-8
Orientation:reverse strand
Alignment:--------CGCCATTTTT
AAAAATGGCGCCATTTTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C A C T G A G T C A T G C G T C A A G C T A G C T A G C T A G C T G A C T
T C G A T C G A C G T A G C T A C G T A C A G T A T C G A C T G A T G C A C T G A T G C T A G C G T C A G C A T C G A T G C A T A G C T G A C T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CGCCATTTTT
--CCTTTGTT
 T G A C A C T G A G T C A T G C G T C A A G C T A G C T A G C T A G C T G A C T
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CGCCATTTTT-
-NCCATTGTTC
 T G A C A C T G A G T C A T G C G T C A A G C T A G C T A G C T A G C T G A C T A C G T
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

E2F2/MA0864.1/Jaspar

Match Rank:7
Score:0.68
Offset:-7
Orientation:reverse strand
Alignment:-------CGCCATTTTT
AAAATGGCGCCATTTT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C A C T G A G T C A T G C G T C A A G C T A G C T A G C T A G C T G A C T
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C T A G C G C T A G C A T C G A T C G A T C G A T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CGCCATTTTT--
--CCATTGTTYB
 T G A C A C T G A G T C A T G C G T C A A G C T A G C T A G C T A G C T G A C T A C G T A C G T
A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CGCCATTTTT-
-NCCATTGTTY
 T G A C A C T G A G T C A T G C G T C A A G C T A G C T A G C T A G C T G A C T A C G T
A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CGCCATTTTT
--CCWTTGTY
 T G A C A C T G A G T C A T G C G T C A A G C T A G C T A G C T A G C T G A C T
A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T