Information for 4-GAGTTGCCGT (Motif 13)

A C T G C T G A A C T G A C G T C G A T C A T G A G T C T G A C C T A G A C G T
Reverse Opposite:
G T C A G A T C A C T G A C T G G T A C C G T A C G T A A G T C A G C T A G T C
p-value:1e-12
log p-value:-2.981e+01
Information Content per bp:1.787
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.64%
Number of Background Sequences with motif89.7
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets52.3 +/- 31.6bp
Average Position of motif in Background53.6 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0033.1_Irf3_1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GAGTTGCCGT----
CAGTTTCGNTTCTN
 A C T G C T G A A C T G A C G T C G A T C A T G A G T C T G A C C T A G A C G T A C G T A C G T A C G T A C G T
A G T C C T G A A T C G C A G T C G A T A C G T A G T C A T C G C A T G C G A T G C A T G A T C G A C T T A G C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAGTTGCCGT
GGGAATTTCC--
 A C G T A C G T A C T G C T G A A C T G A C G T C G A T C A T G A G T C T G A C C T A G A C G T
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T

PB0035.1_Irf5_1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTGCCGT----
NTGGTTTCGGTTNNN
 A C G T A C T G C T G A A C T G A C G T C G A T C A T G A G T C T G A C C T A G A C G T A C G T A C G T A C G T A C G T
A G C T G A C T C T A G A C T G A C G T G C A T A G C T A G T C C T A G C T A G G A C T G C A T G A C T G C T A C G A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GAGTTGCCGT--
CTGTTGCTAGGS
 A C T G C T G A A C T G A C G T C G A T C A T G A G T C T G A C C T A G A C G T A C G T A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAGTTGCCGT---
-AGTTTCAKTTTC
 A C T G C T G A A C T G A C G T C G A T C A T G A G T C T G A C C T A G A C G T A C G T A C G T A C G T
A C G T C T G A T A C G G C A T A G C T A G C T A G T C T C G A A C T G C A G T A G C T A G C T G A T C

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GAGTTGCCGT------
--GTTGCCATGGNAAC
 A C T G C T G A A C T G A C G T C G A T C A T G A G T C T G A C C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

IRF8/MA0652.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GAGTTGCCGT-----
-AGTTTCGGTTTCGN
 A C T G C T G A A C T G A C G T C G A T C A T G A G T C T G A C C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A T A C G A C G T G C A T A G C T A G T C C T A G A T C G C G A T C G A T A C G T G A T C C T A G C T G A

PB0036.1_Irf6_1/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GAGTTGCCGT---
NNNTTGGTTTCGNTNNN
 A C G T A C G T A C G T A C G T A C T G C T G A A C T G A C G T C G A T C A T G A G T C T G A C C T A G A C G T A C G T A C G T A C G T
G C T A G T A C G C A T A C G T A G C T C T A G A C T G A C G T G C A T A C G T A G T C C T A G C T G A G A C T G A T C G C T A C A T G

PB0037.1_Isgf3g_1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTGCCGT----
TNAGTTTCGATTTTN
 A C G T A C T G C T G A A C T G A C G T C G A T C A T G A G T C T G A C C T A G A C G T A C G T A C G T A C G T A C G T
C A G T G C A T C T G A A T C G C G A T G C A T A C G T A G T C C T A G C G T A C G A T G C A T G A C T G A C T A C T G

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GAGTTGCCGT---
-AGTTTCAGTTTC
 A C T G C T G A A C T G A C G T C G A T C A T G A G T C T G A C C T A G A C G T A C G T A C G T A C G T
A C G T C T G A A T C G A G C T A G C T A C G T T A G C C T G A T A C G C G A T A C G T G A C T A G T C