Motif 40

Information for 16-CACCTACTAG (Motif 40)

Reverse Opposite:

p-value:	1e-6
log p-value:	-1.437e+01
Information Content per bp:	1.934
Number of Target Sequences with motif	3.0
Percentage of Target Sequences with motif	0.42%
Number of Background Sequences with motif	1.1
Percentage of Background Sequences with motif	0.00%
Average Position of motif in Targets	66.3 +/- 18.3bp
Average Position of motif in Background	66.8 +/- 13.8bp
Strand Bias (log2 ratio + to - strand density)	1.0
Multiplicity (# of sites on avg that occur together)	1.00
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

VENTX/MA0724.1/Jaspar

Match Rank:	1
Score:	0.63
Offset:	1
Orientation:	forward strand
Alignment:	CACCTACTAG -ACCGATTAG

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:	2
Score:	0.63
Offset:	-3
Orientation:	reverse strand
Alignment:	---CACCTACTAG TGACACCT-----

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:	3
Score:	0.61
Offset:	-3
Orientation:	forward strand
Alignment:	---CACCTACTAG SNGCACCTGCHS-

TBX5/MA0807.1/Jaspar

Match Rank:	4
Score:	0.61
Offset:	-3
Orientation:	reverse strand
Alignment:	---CACCTACTAG TCACACCT-----

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:	5
Score:	0.60
Offset:	-2
Orientation:	forward strand
Alignment:	--CACCTACTAG NNCACCTGNN--

SNAI2/MA0745.1/Jaspar

Match Rank:	6
Score:	0.60
Offset:	-1
Orientation:	reverse strand
Alignment:	-CACCTACTAG NCACCTGTN--

TBX4/MA0806.1/Jaspar

Match Rank:	7
Score:	0.59
Offset:	-3
Orientation:	reverse strand
Alignment:	---CACCTACTAG TCACACCT-----

PH0107.1_Msx2/Jaspar

Match Rank:	8
Score:	0.59
Offset:	-3
Orientation:	forward strand
Alignment:	---CACCTACTAG---- GAAGACCAATTAGCGCT

TCF3/MA0522.2/Jaspar

Match Rank:	9
Score:	0.59
Offset:	-2
Orientation:	forward strand
Alignment:	--CACCTACTAG AACACCTGCT--

TCF4/MA0830.1/Jaspar

Match Rank:	10
Score:	0.58
Offset:	-2
Orientation:	forward strand
Alignment:	--CACCTACTAG CGCACCTGCT--