Information for 8-AGTGTCTGTCTGG (Motif 7)

C G T A A C T G C G A T A T C G A C G T A T G C A C G T A C T G A C G T A G T C A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C T G C G T A A G T C C G T A A T C G C G T A A T G C C G T A G T A C A C G T
p-value:1e-11
log p-value:-2.573e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.2 +/- 13.8bp
Average Position of motif in Background42.8 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.76
Offset:5
Orientation:forward strand
Alignment:AGTGTCTGTCTGG
-----CTGTCTGG
 C G T A A C T G C G A T A T C G A C G T A T G C A C G T A C T G A C G T A G T C A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:AGTGTCTGTCTGG-----
-NNTNNTGTCTGGNNTNG
 C G T A A C T G C G A T A T C G A C G T A T G C A C G T A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.73
Offset:3
Orientation:forward strand
Alignment:AGTGTCTGTCTGG
---VBSYGTCTGG
 C G T A A C T G C G A T A T C G A C G T A T G C A C G T A C T G A C G T A G T C A C G T A C T G A C T G
A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.65
Offset:6
Orientation:forward strand
Alignment:AGTGTCTGTCTGG---
------GGTCTGGCAT
 C G T A A C T G C G A T A T C G A C G T A T G C A C G T A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.65
Offset:5
Orientation:forward strand
Alignment:AGTGTCTGTCTGG
-----TWGTCTGV
 C G T A A C T G C G A T A T C G A C G T A T G C A C G T A C T G A C G T A G T C A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AGTGTCTGTCTGG-----
-----CTGTCTGTCACCT
 C G T A A C T G C G A T A T C G A C G T A T G C A C G T A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:AGTGTCTGTCTGG-----
------TGTCTGDCACCT
 C G T A A C T G C G A T A T C G A C G T A T G C A C G T A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD3/MA0795.1/Jaspar

Match Rank:8
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:AGTGTCTGTCTGG---
------TGTCTAGACG
 C G T A A C T G C G A T A T C G A C G T A T G C A C G T A C T G A C G T A G T C A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G

IRF8/MA0652.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGTGTCTGTCTGG-
AGTTTCGGTTTCGN
 C G T A A C T G C G A T A T C G A C G T A T G C A C G T A C T G A C G T A G T C A C G T A C T G A C T G A C G T
C T G A T A C G A C G T G C A T A G C T A G T C C T A G A T C G C G A T C G A T A C G T G A T C C T A G C T G A

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:AGTGTCTGTCTGG
-----NTGTCAN-
 C G T A A C T G C G A T A T C G A C G T A T G C A C G T A C T G A C G T A G T C A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T