Information for 13-AGGCATAACAAGT (Motif 16)

C G T A C T A G A C T G A G T C C G T A C G A T C G T A C G T A A G T C C G T A C T G A A C T G G A C T
Reverse Opposite:
C T G A A G T C A G C T A C G T A C T G A C G T A C G T C G T A A C G T A C T G A G T C A G T C A C G T
p-value:1e-8
log p-value:-1.993e+01
Information Content per bp:1.933
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets69.4 +/- 18.0bp
Average Position of motif in Background59.0 +/- 8.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0120.1_Foxj1_2/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGGCATAACAAGT-
ATGTCACAACAACAC
 A C G T C G T A C T A G A C T G A G T C C G T A C G A T C G T A C G T A A G T C C G T A C T G A A C T G G A C T A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

PB0121.1_Foxj3_2/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGGCATAACAAGT--
AACACCAAAACAAAGGA
 A C G T A C G T C G T A C T A G A C T G A G T C C G T A C G A T C G T A C G T A A G T C C G T A C T G A A C T G G A C T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGCATAACAAGT--
AAAAATAACAAACGG
 C G T A C T A G A C T G A G T C C G T A C G A T C G T A C G T A A G T C C G T A C T G A A C T G G A C T A C G T A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

PB0123.1_Foxl1_2/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGGCATAACAAGT--
ATATCAAAACAAAACA
 A C G T C G T A C T A G A C T G A G T C C G T A C G A T C G T A C G T A A G T C C G T A C T G A A C T G G A C T A C G T A C G T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

PH0148.1_Pou3f3/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----AGGCATAACAAGT
AAAATATGCATAATAAA-
 A C G T A C G T A C G T A C G T A C G T C G T A C T A G A C T G A G T C C G T A C G A T C G T A C G T A A G T C C G T A C T G A A C T G G A C T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGGCATAACAAGT----
--NNNTAACAATTATAN
 C G T A C T A G A C T G A G T C C G T A C G A T C G T A C G T A A G T C C G T A C T G A A C T G G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGGCATAACAAGT
AAGCCATAAAA---
 A C G T C G T A C T A G A C T G A G T C C G T A C G A T C G T A C G T A A G T C C G T A C T G A A C T G G A C T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T

PB0122.1_Foxk1_2/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGGCATAACAAGT
CAAACAACAACACCT
 A C G T A C G T C G T A C T A G A C T G A G T C C G T A C G A T C G T A C G T A A G T C C G T A C T G A A C T G G A C T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGGCATAACAAGT
-GTCATAAAAN--
 C G T A C T A G A C T G A G T C C G T A C G A T C G T A C G T A A G T C C G T A C T G A A C T G G A C T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGGCATAACAAGT-
AGAGCCATAAAATTCG
 A C G T A C G T C G T A C T A G A C T G A G T C C G T A C G A T C G T A C G T A A G T C C G T A C T G A A C T G G A C T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G