Information for 7-TGAGGGTCAAAGGGAG (Motif 9)

C A G T A T C G T G C A T C A G A C T G A T C G C A G T T A G C T G C A T C G A C T G A A C T G C T A G T C A G C G T A T C A G
Reverse Opposite:
A G T C C G A T A G T C A G T C A G T C G A C T A G C T A C G T A T C G G T C A A T G C G T A C A G T C A C G T A T G C G C T A
p-value:1e-10
log p-value:-2.513e+01
Information Content per bp:1.663
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif59.2
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets65.3 +/- 19.6bp
Average Position of motif in Background44.2 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR2C2/MA0504.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TGAGGGTCAAAGGGAG
-AGGGGTCAGAGGTCA
 C A G T A T C G T G C A T C A G A C T G A T C G C A G T T A G C T G C A T C G A C T G A A C T G C T A G T C A G C G T A T C A G
A C G T T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TGAGGGTCAAAGGGAG
---AGGTCAAGGTCA-
 C A G T A T C G T G C A T C A G A C T G A T C G C A G T T A G C T G C A T C G A C T G A A C T G C T A G T C A G C G T A T C A G
A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGAGGGTCAAAGGGAG
-GTAGGGCAAAGGTCA
 C A G T A T C G T G C A T C A G A C T G A T C G C A G T T A G C T G C A T C G A C T G A A C T G C T A G T C A G C G T A T C A G
A C G T A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TGAGGGTCAAAGGGAG
---AGGTCAAGGTCA-
 C A G T A T C G T G C A T C A G A C T G A T C G C A G T T A G C T G C A T C G A C T G A A C T G C T A G T C A G C G T A T C A G
A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T

PLAG1/MA0163.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TGAGGGTCAAAGGGAG
--GGGGCCCAAGGGGG
 C A G T A T C G T G C A T C A G A C T G A T C G C A G T T A G C T G C A T C G A C T G A A C T G C T A G T C A G C G T A T C A G
A C G T A C G T A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G

RARA::RXRA/MA0159.1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TGAGGGTCAAAGGGAG----
---AGGTCACGGAGAGGTCA
 C A G T A T C G T G C A T C A G A C T G A T C G C A G T T A G C T G C A T C G A C T G A A C T G C T A G T C A G C G T A T C A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TGAGGGTCAAAGGGAG
--TGGGGCAAAGGTCA
 C A G T A T C G T G C A T C A G A C T G A T C G C A G T T A G C T G C A T C G A C T G A A C T G C T A G T C A G C G T A T C A G
A C G T A C G T C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

NR2F1/MA0017.2/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGAGGGTCAAAGGGAG
CAAAGGTCAAGGG---
 C A G T A T C G T G C A T C A G A C T G A T C G C A G T T A G C T G C A T C G A C T G A A C T G C T A G T C A G C G T A T C A G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TGAGGGTCAAAGGGAG-
-GTAGGTCACTGGGTCA
 C A G T A T C G T G C A T C A G A C T G A T C G C A G T T A G C T G C A T C G A C T G A A C T G C T A G T C A G C G T A T C A G A C G T
A C G T A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TGAGGGTCAAAGGGAG
--TAGGGCAAAGGTCA
 C A G T A T C G T G C A T C A G A C T G A T C G C A G T T A G C T G C A T C G A C T G A A C T G C T A G T C A G C G T A T C A G
A C G T A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A