Information for 3-GTATAAAATKTGAGAC (Motif 4)

T A C G C G A T C G T A A C G T C T G A C G T A G C T A G T C A A C G T A C T G A C G T T A C G C G T A A C T G T G C A A T G C
Reverse Opposite:
T A C G A C G T G T A C C G A T A G T C G T C A G T A C T C G A C A G T C A G T A C G T G A C T C G T A C G A T C G T A A T G C
p-value:1e-12
log p-value:-2.861e+01
Information Content per bp:1.693
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif12.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets39.3 +/- 19.2bp
Average Position of motif in Background53.1 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBP/MA0108.2/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GTATAAAATKTGAGAC
GTATAAAAGGCGGGG-
 T A C G C G A T C G T A A C G T C T G A C G T A G C T A G T C A A C G T A C T G A C G T T A C G C G T A A C T G T G C A A T G C
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GTATAAAATKTGAGAC
GTATAAAAGGCGGGG-
 T A C G C G A T C G T A A C G T C T G A C G T A G C T A G T C A A C G T A C T G A C G T T A C G C G T A A C T G T G C A A T G C
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GTATAAAATKTGAGAC
AATGCAATAAAATTTAT---
 A C G T A C G T A C G T A C G T T A C G C G A T C G T A A C G T C T G A C G T A G C T A G T C A A C G T A C T G A C G T T A C G C G T A A C T G T G C A A T G C
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GTATAAAATKTGAGAC
CTACCAATAAAATTCT----
 A C G T A C G T A C G T A C G T T A C G C G A T C G T A A C G T C T G A C G T A G C T A G T C A A C G T A C T G A C G T T A C G C G T A A C T G T G C A A T G C
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GTATAAAATKTGAGAC
NCYAATAAAA--------
 A C G T A C G T T A C G C G A T C G T A A C G T C T G A C G T A G C T A G T C A A C G T A C T G A C G T T A C G C G T A A C T G T G C A A T G C
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0105.1_Arid3a_2/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GTATAAAATKTGAGAC
ACCCGTATCAAATTT-----
 A C G T A C G T A C G T A C G T T A C G C G A T C G T A A C G T C T G A C G T A G C T A G T C A A C G T A C T G A C G T T A C G C G T A A C T G T G C A A T G C
G T C A G T A C T G A C T A G C T C A G A G C T T C G A A G C T T A G C C T G A C G T A T C G A C G A T G A C T C A G T A C G T A C G T A C G T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GTATAAAATKTGAGAC
AACCCAATAAAATTCG----
 A C G T A C G T A C G T A C G T T A C G C G A T C G T A A C G T C T G A C G T A G C T A G T C A A C G T A C T G A C G T T A C G C G T A A C T G T G C A A T G C
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTATAAAATKTGAGAC
CCAATAAAAA-------
 A C G T T A C G C G A T C G T A A C G T C T G A C G T A G C T A G T C A A C G T A C T G A C G T T A C G C G T A A C T G T G C A A T G C
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTATAAAATKTGAGAC
CCAATAAAAC-------
 A C G T T A C G C G A T C G T A A C G T C T G A C G T A G C T A G T C A A C G T A C T G A C G T T A C G C G T A A C T G T G C A A T G C
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTATAAAATKTGAGAC
CCYMATAAAA--------
 A C G T A C G T T A C G C G A T C G T A A C G T C T G A C G T A G C T A G T C A A C G T A C T G A C G T T A C G C G T A A C T G T G C A A T G C
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T