Information for 8-TGTTGTGAAAATGACG (Motif 27)

A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T C T A G C T G A A G T C A C T G
Reverse Opposite:
G T A C A C T G A G C T A G T C C G T A A G C T A C G T C G A T A C G T A G T C C G T A A G T C C G T A C G T A A G T C G T C A
p-value:1e-4
log p-value:-9.541e+00
Information Content per bp:1.924
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.34%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets89.5 +/- 2.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0013.1_Eomes_1/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TGTTGTGAAAATGACG
GAAAAGGTGTGAAAATT---
 A C G T A C G T A C G T A C G T A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T C T A G C T G A A G T C A C T G
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T A C G T A C G T A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TGTTGTGAAAATGACG
GTNTTGTTGTGANNT-----
 A C G T A C G T A C G T A C G T A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T C T A G C T G A A G T C A C T G
C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T A C G T A C G T A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TGTTGTGAAAATGACG
CATTGTTATGCAAAT----
 A C G T A C G T A C G T A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T C T A G C T G A A G T C A C T G
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGTTGTGAAAATGACG
AAGGTGTGAAAAT----
 A C G T A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T C T A G C T G A A G T C A C T G
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T A C G T A C G T A C G T A C G T

CEBPA/MA0102.3/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGTTGTGAAAATGACG
NATTGTGCAAT-----
 A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T C T A G C T G A A G T C A C T G
C A G T T C G A A C G T A C G T C T A G A C G T A C T G G T A C C G T A C G T A A G C T A C G T A C G T A C G T A C G T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TGTTGTGAAAATGACG
--TTATGCAAATTA--
 A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T C T A G C T G A A G T C A C T G
A C G T A C G T C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A A C G T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGTTGTGAAAATGACG
AGGTGTGAAA------
 A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T C T A G C T G A A G T C A C T G
C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TGTTGTGAAAATGACG
--TTATGCAAATTA--
 A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T C T A G C T G A A G T C A C T G
A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGTTGTGAAAATGACG
TAGGTGTGAAG------
 A C G T A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T C T A G C T G A A G T C A C T G
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TGTTGTGAAAATGACG
--TTATGCAAAT----
 A C G T A C T G C G A T A C G T A C T G A C G T A C T G C G T A C G T A C G T A C T G A A C G T C T A G C T G A A G T C A C T G
A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T