Information for 9-TYTCTGTGAC (Motif 11)

C G A T A G C T A C G T A G T C C G A T A C T G A C G T A C T G C G T A G T A C
Reverse Opposite:
A C T G A C G T A G T C C G T A A G T C C G T A A C T G C G T A C T G A C G T A
p-value:1e-6
log p-value:-1.471e+01
Information Content per bp:1.889
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif123.2
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets55.8 +/- 26.8bp
Average Position of motif in Background52.5 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax2/MA0067.1/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TYTCTGTGAC-
---NCGTGACN
 C G A T A G C T A C G T A G T C C G A T A C T G A C G T A C T G C G T A G T A C A C G T
A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TYTCTGTGAC
--GCTGTG--
 C G A T A G C T A C G T A G T C C G A T A C T G A C G T A C T G C G T A G T A C
A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TYTCTGTGAC--
TTTCTNAGAAAN
 C G A T A G C T A C G T A G T C C G A T A C T G A C G T A C T G C G T A G T A C A C G T A C G T
A G C T A C G T A C G T A G T C G A C T G C T A C T G A A C T G C G T A C G T A T G C A G A C T

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TYTCTGTGAC--
-TTCTTGGAAAN
 C G A T A G C T A C G T A G T C C G A T A C T G A C G T A C T G C G T A G T A C A C G T A C G T
A C G T A G C T C G A T A G T C G A C T C A G T C T A G C T A G C T G A C G T A T C G A G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TYTCTGTGAC--
TGTCTGDCACCT
 C G A T A G C T A C G T A G T C C G A T A C T G A C G T A C T G C G T A G T A C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TYTCTGTGAC---
NNNNTTGTGTGCTTNN
 A C G T A C G T A C G T C G A T A G C T A C G T A G T C C G A T A C T G A C G T A C T G C G T A G T A C A C G T A C G T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TYTCTGTGAC
RTCATGTGAC
 C G A T A G C T A C G T A G T C C G A T A C T G A C G T A C T G C G T A G T A C
T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TYTCTGTGAC---
-----TTGACAGG
 C G A T A G C T A C G T A G T C C G A T A C T G A C G T A C T G C G T A G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

MEIS1/MA0498.2/Jaspar

Match Rank:9
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TYTCTGTGAC--
-----TTGACAG
 C G A T A G C T A C G T A G T C C G A T A C T G A C G T A C T G C G T A G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TYTCTGTGAC--
CTGTCTGTCACCT
 A C G T C G A T A G C T A C G T A G T C C G A T A C T G A C G T A C T G C G T A G T A C A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T