Information for 8-KAAGAACAAG (Motif 10)

A C G T C G T A C G T A C A T G C T G A C G T A A G T C C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T G C A T A C T G C G A T G A C T G T A C G C A T C G A T G T C A
p-value:1e-8
log p-value:-1.934e+01
Information Content per bp:1.715
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif3.95%
Number of Background Sequences with motif568.3
Percentage of Background Sequences with motif1.18%
Average Position of motif in Targets52.1 +/- 25.7bp
Average Position of motif in Background49.6 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0200.1_Zfp187_2/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-KAAGAACAAG-----
NNAGGGACAAGGGCNC
 A C G T A C G T C G T A C G T A C A T G C T G A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:KAAGAACAAG----
--AGGTCAAGGTCA
 A C G T C G T A C G T A C A T G C T G A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

PB0062.1_Sox12_1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--KAAGAACAAG--
NTTNAGAACAATTA
 A C G T A C G T A C G T C G T A C G T A C A T G C T G A C G T A A G T C C G T A C G T A A C T G A C G T A C G T
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

PH0171.1_Nkx2-1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:KAAGAACAAG-------
-AANTTCAAGTGGCTTN
 A C G T C G T A C G T A C A T G C T G A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:KAAGAACAAG----
--AGGTCAAGGTCA
 A C G T C G T A C G T A C A T G C T G A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

Nr5a2/MA0505.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:KAAGAACAAG------
-AAGTTCAAGGTCAGC
 A C G T C G T A C G T A C A T G C T G A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

PB0063.1_Sox13_1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-KAAGAACAAG-----
TTAAGAACAATAAATT
 A C G T A C G T C G T A C G T A C A T G C T G A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-KAAGAACAAG------
ATAAGAACAAAGGACTA
 A C G T A C G T C G T A C G T A C A T G C T G A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PH0040.1_Hmbox1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--KAAGAACAAG-----
GANGTTAACTAGTTTNN
 A C G T A C G T A C G T C G T A C G T A C A T G C T G A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

PB0072.1_Sox5_1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-KAAGAACAAG-----
TTTAGAACAATAAAAT
 A C G T A C G T C G T A C G T A C A T G C T G A C G T A A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T