Information for 3-YAAYTGGWATTST (Motif 5)

A G C T C G T A C G T A G A T C A C G T A C T G A C T G C G A T G T C A A C G T A C G T A T C G A C G T
Reverse Opposite:
C G T A A T G C C G T A C G T A A C G T C G T A A G T C A G T C G T C A C T A G A C G T A C G T C T G A
p-value:1e-11
log p-value:-2.634e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.5 +/- 15.5bp
Average Position of motif in Background69.2 +/- 22.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0107.1_Msx2/Jaspar

Match Rank:1
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----YAAYTGGWATTST
ANCGCTAATTGGTCTNN-
 A C G T A C G T A C G T A C G T A C G T A G C T C G T A C G T A G A T C A C G T A C T G A C T G C G A T G T C A A C G T A C G T A T C G A C G T
T C G A C T A G G T A C C T A G G T A C G A C T C G T A C G T A A C G T C G A T C T A G T A C G G A C T A T G C G A C T A C G T A G T C A C G T

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:YAAYTGGWATTST
--NCTGGAATGC-
 A G C T C G T A C G T A G A T C A C G T A C T G A C T G C G A T G T C A A C G T A C G T A T C G A C G T
A C G T A C G T G A T C G T A C C G A T A C T G A C T G C G T A C G T A A C G T A C T G G A T C A C G T

PB0106.1_Arid5a_2/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-YAAYTGGWATTST---
TNNTTTCGTATTNNANN
 A C G T A G C T C G T A C G T A G A T C A C G T A C T G A C T G C G A T G T C A A C G T A C G T A T C G A C G T A C G T A C G T A C G T
A C G T A G C T T C G A G C A T G A C T G A C T A T G C A T C G A C G T T G C A A C G T C G A T A C T G G C A T C T G A G A C T T A C G

Sox1/MA0870.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-YAAYTGGWATTST-
AACAATGNTATTGTT
 A C G T A G C T C G T A C G T A G A T C A C G T A C T G A C T G C G A T G T C A A C G T A C G T A T C G A C G T A C G T
T C G A C T G A A G T C C T G A G T C A A C G T T A C G A G C T G C A T C G T A A C G T C A G T A C T G C G A T A C G T

PH0108.1_Msx3/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----YAAYTGGWATTST
NNNTTAATTGGTTTTN-
 A C G T A C G T A C G T A C G T A G C T C G T A C G T A G A T C A C G T A C T G A C T G C G A T G T C A A C G T A C G T A T C G A C G T
C G T A C G T A G T C A G A C T G A C T C G T A C G T A A C G T A G C T C T A G T A C G A C G T G A C T C A G T A G C T A C T G A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----YAAYTGGWATTST
NNNTTAATTGGTTTTT-
 A C G T A C G T A C G T A C G T A G C T C G T A C G T A G A T C A C G T A C T G A C T G C G A T G T C A A C G T A C G T A T C G A C G T
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-YAAYTGGWATTST
NTAATTGG------
 A C G T A G C T C G T A C G T A G A T C A C G T A C T G A C T G C G A T G T C A A C G T A C G T A T C G A C G T
A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0169.1_Sox15_2/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-YAAYTGGWATTST-
TTGAATGAAATTCGA
 A C G T A G C T C G T A C G T A G A T C A C G T A C T G A C T G C G A T G T C A A C G T A C G T A T C G A C G T A C G T
A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A

PH0005.1_Barhl1/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----YAAYTGGWATTST
GNNTTAATTGGTTGTT-
 A C G T A C G T A C G T A C G T A G C T C G T A C G T A G A T C A C G T A C T G A C T G C G A T G T C A A C G T A C G T A T C G A C G T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T A C G T

PH0089.1_Isx/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----YAAYTGGWATTST
ACNNCTAATTAGNNNN--
 A C G T A C G T A C G T A C G T A C G T A G C T C G T A C G T A G A T C A C G T A C T G A C T G C G A T G T C A A C G T A C G T A T C G A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T A C G T A C G T