Information for 7-HTCTGTCTTGCAG (Motif 19)

G C T A C A G T A G T C A C G T A C T G A C G T G T A C A C G T A C G T A T C G A T G C C G T A C T A G
Reverse Opposite:
A G T C A C G T A T C G A T G C C G T A C G T A A C T G C G T A A G T C C G T A A C T G G T C A C A G T
p-value:1e-8
log p-value:-1.925e+01
Information Content per bp:1.846
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.2 +/- 10.0bp
Average Position of motif in Background69.3 +/- 14.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:HTCTGTCTTGCAG--
--CTGTCTGTCACCT
 G C T A C A G T A G T C A C G T A C T G A C G T G T A C A C G T A C G T A T C G A T G C C G T A C T A G A C G T A C G T
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:HTCTGTCTTGCAG
--CTGTCTGG---
 G C T A C A G T A G T C A C G T A C T G A C G T G T A C A C G T A C G T A T C G A T G C C G T A C T A G
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:HTCTGTCTTGCAG--
---TGTCTGDCACCT
 G C T A C A G T A G T C A C G T A C T G A C G T G T A C A C G T A C G T A T C G A T G C C G T A C T A G A C G T A C G T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--HTCTGTCTTGCAG--
NNTNNTGTCTGGNNTNG
 A C G T A C G T G C T A C A G T A G T C A C G T A C T G A C G T G T A C A C G T A C G T A T C G A T G C C G T A C T A G A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:HTCTGTCTTGCAG
-GCTGTG------
 G C T A C A G T A G T C A C G T A C T G A C G T G T A C A C G T A C G T A T C G A T G C C G T A C T A G
A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--HTCTGTCTTGCAG--
NNCTTTGTTTTGNTNNN
 A C G T A C G T G C T A C A G T A G T C A C G T A C T G A C G T G T A C A C G T A C G T A T C G A T G C C G T A C T A G A C G T A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:HTCTGTCTTGCAG
---NATGTTGCAA
 G C T A C A G T A G T C A C G T A C T G A C G T G T A C A C G T A C G T A T C G A T G C C G T A C T A G
A C G T A C G T A C G T C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:HTCTGTCTTGCAG--
---GGGATTGCATNN
 G C T A C A G T A G T C A C G T A C T G A C G T G T A C A C G T A C G T A T C G A T G C C G T A C T A G A C G T A C G T
A C G T A C G T A C G T T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:HTCTGTCTTGCAG
VBSYGTCTGG---
 G C T A C A G T A G T C A C G T A C T G A C G T G T A C A C G T A C G T A T C G A T G C C G T A C T A G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:HTCTGTCTTGCAG---
-ANATTTTTGCAANTN
 G C T A C A G T A G T C A C G T A C T G A C G T G T A C A C G T A C G T A T C G A T G C C G T A C T A G A C G T A C G T A C G T
A C G T C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G