Information for 18-STKGTTTTTHAAAACA (Motif 47)

A T C G A G C T A C T G A C T G A G C T A G C T A C G T A C G T G C A T G C T A C G T A C G T A T C G A G T C A G T A C G T C A
Reverse Opposite:
A C G T A C T G A C G T A G C T C G A T A C G T C G A T C G T A C G T A C G T A C T G A T C G A G T A C T G A C C T G A T A G C
p-value:1e-7
log p-value:-1.723e+01
Information Content per bp:1.690
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets44.3 +/- 21.7bp
Average Position of motif in Background49.5 +/- 34.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0182.1_Srf_2/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---STKGTTTTTHAAAACA
NNNNTTTTTTTTTNAAC--
 A C G T A C G T A C G T A T C G A G C T A C T G A C T G A G C T A G C T A C G T A C G T G C A T G C T A C G T A C G T A T C G A G T C A G T A C G T C A
C G A T C G T A T C G A A C G T C A G T C A G T C A G T C G A T A C G T A C G T A C G T G A C T G A C T G C A T G C T A T G C A A T G C A C G T A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:STKGTTTTTHAAAACA-
--NNNTTTNTAATACNG
 A T C G A G C T A C T G A C T G A G C T A G C T A C G T A C G T G C A T G C T A C G T A C G T A T C G A G T C A G T A C G T C A A C G T
A C G T A C G T C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:STKGTTTTTHAAAACA
------TTTGAAACCG
 A T C G A G C T A C T G A C T G A G C T A G C T A C G T A C G T G C A T G C T A C G T A C G T A T C G A G T C A G T A C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

POL012.1_TATA-Box/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-STKGTTTTTHAAAACA
NNNNNNCTTTTATAN--
 A C G T A T C G A G C T A C T G A C T G A G C T A G C T A C G T A C G T G C A T G C T A C G T A C G T A T C G A G T C A G T A C G T C A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-STKGTTTTTHAAAACA
NNNNNNCTTTTATAN--
 A C G T A T C G A G C T A C T G A C T G A G C T A G C T A C G T A C G T G C A T G C T A C G T A C G T A T C G A G T C A G T A C G T C A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.55
Offset:4
Orientation:forward strand
Alignment:STKGTTTTTHAAAACA---
----ATTTGCATAACAATG
 A T C G A G C T A C T G A C T G A G C T A G C T A C G T A C G T G C A T G C T A C G T A C G T A T C G A G T C A G T A C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:STKGTTTTTHAAAACA
-----VTTRCATAAY-
 A T C G A G C T A C T G A C T G A G C T A G C T A C G T A C G T G C A T G C T A C G T A C G T A T C G A G T C A G T A C G T C A
A C G T A C G T A C G T A C G T A C G T T C A G G A C T A C G T C T G A G A T C T C G A G A C T G T C A C T G A A G T C A C G T

LIN54/MA0619.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:forward strand
Alignment:STKGTTTTTHAAAACA
-----ATTTGAATT--
 A T C G A G C T A C T G A C T G A G C T A G C T A C G T A C G T G C A T G C T A C G T A C G T A T C G A G T C A G T A C G T C A
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T

PB0080.1_Tbp_1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:STKGTTTTTHAAAACA-
-NANTTATATATAANGN
 A T C G A G C T A C T G A C T G A G C T A G C T A C G T A C G T G C A T G C T A C G T A C G T A T C G A G T C A G T A C G T C A A C G T
A C G T A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A

NFAT5/MA0606.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:STKGTTTTTHAAAACA
---ATTTTCCATT---
 A T C G A G C T A C T G A C T G A G C T A G C T A C G T A C G T G C A T G C T A C G T A C G T A T C G A G T C A G T A C G T C A
A C G T A C G T A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T A C G T A C G T A C G T