Information for 18-TCGCAAAGGT (Motif 37)

A C G T A G T C C T A G A G T C C G T A G T C A C G T A A C T G A C T G A C G T
Reverse Opposite:
C G T A A G T C A G T C C G A T A C G T A C G T A C T G A G T C T A C G C G T A
p-value:1e-8
log p-value:-1.938e+01
Information Content per bp:1.879
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets49.4 +/- 28.2bp
Average Position of motif in Background79.6 +/- 17.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0161.1_Rxra_2/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TCGCAAAGGT------
TCGCGAAGGTTGTACT
 A C G T A G T C C T A G A G T C C G T A G T C A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TCGCAAAGGT--
ANGNAAAGGTCA
 A C G T A G T C C T A G A G T C C G T A G T C A C G T A A C T G A C T G A C G T A C G T A C G T
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TCGCAAAGGT------
TCTCAAAGGTCACGAG
 A C G T A G T C C T A G A G T C C G T A G T C A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TCGCAAAGGT------
TCTCAAAGGTCACCTG
 A C G T A G T C C T A G A G T C C G T A G T C A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TCGCAAAGGT
-AACAAAGG-
 A C G T A G T C C T A G A G T C C G T A G T C A C G T A A C T G A C T G A C G T
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TCGCAAAGGT---
---CAAAGGTCAG
 A C G T A G T C C T A G A G T C C G T A G T C A C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TCGCAAAGGT
-RACAAWGG-
 A C G T A G T C C T A G A G T C C G T A G T C A C G T A A C T G A C T G A C G T
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TCGCAAAGGT--
TAGGGCAAAGGTCA
 A C G T A C G T A C G T A G T C C T A G A G T C C G T A G T C A C G T A A C T G A C T G A C G T A C G T A C G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TCGCAAAGGT--
TGGGGCAAAGGTCA
 A C G T A C G T A C G T A G T C C T A G A G T C C G T A G T C A C G T A A C T G A C T G A C G T A C G T A C G T
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TCGCAAAGGT--
GTAGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T A G T C C T A G A G T C C G T A G T C A C G T A A C T G A C T G A C G T A C G T A C G T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A