Information for 12-CCTCACTCAAGAT (Motif 19)

G T A C A G T C A C G T A G T C G T C A A G T C C G A T A G T C G T C A C T G A A T C G G T C A C G A T
Reverse Opposite:
G C T A A C G T T A G C A G C T C A G T C T A G C G T A A C T G A C G T C T A G T G C A A C T G C A T G
p-value:1e-11
log p-value:-2.571e+01
Information Content per bp:1.751
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.6 +/- 24.5bp
Average Position of motif in Background74.9 +/- 7.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CCTCACTCAAGAT
AGCCACTCAAG--
 G T A C A G T C A C G T A G T C G T C A A G T C C G A T A G T C G T C A C T G A A T C G G T C A C G A T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CCTCACTCAAGAT
-NSCACTYVAV--
 G T A C A G T C A C G T A G T C G T C A A G T C C G A T A G T C G T C A C T G A A T C G G T C A C G A T
A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCTCACTCAAGAT
MRSCACTYAA---
 G T A C A G T C A C G T A G T C G T C A A G T C C G A T A G T C G T C A C T G A A T C G G T C A C G A T
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCTCACTCAAGAT
-RSCACTYRAG--
 G T A C A G T C A C G T A G T C G T C A A G T C C G A T A G T C G T C A C T G A A T C G G T C A C G A T
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCTCACTCAAGAT
AASCACTCAA---
 G T A C A G T C A C G T A G T C G T C A A G T C C G A T A G T C G T C A C T G A A T C G G T C A C G A T
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCTCACTCAAGAT
GCCACACCCA----
 A C G T G T A C A G T C A C G T A G T C G T C A A G T C C G A T A G T C G T C A C T G A A T C G G T C A C G A T
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCTCACTCAAGAT
GGCCACACCCAN---
 A C G T A C G T G T A C A G T C A C G T A G T C G T C A A G T C C G A T A G T C G T C A C T G A A T C G G T C A C G A T
C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G A C G T A C G T A C G T

Klf1/MA0493.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCTCACTCAAGAT
GGCCACACCCA----
 A C G T A C G T G T A C A G T C A C G T A G T C G T C A A G T C C G A T A G T C G T C A C T G A A T C G G T C A C G A T
C T A G T C A G T G A C G A T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CCTCACTCAAGAT
NNAGTCCCACTCNNNN-
 A C G T A C G T A C G T A C G T G T A C A G T C A C G T A G T C G T C A A G T C C G A T A G T C G T C A C T G A A T C G G T C A C G A T
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCTCACTCAAGAT
--CCACTTGAA--
 G T A C A G T C A C G T A G T C G T C A A G T C C G A T A G T C G T C A C T G A A T C G G T C A C G A T
A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T