Information for 3-GKWTTTKWWCAAGRAT (Motif 6)

A C T G A C G T C G T A A C G T C G A T A C G T A C T G C G A T C G T A A G T C C G T A C G T A A C T G C T G A C G T A C G A T
Reverse Opposite:
C G T A A C G T A G C T A G T C A C G T A C G T A C T G C G A T C G T A G T A C C G T A C G T A C G T A C G A T G T C A G T A C
p-value:1e-11
log p-value:-2.642e+01
Information Content per bp:1.848
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.8 +/- 29.9bp
Average Position of motif in Background34.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GKWTTTKWWCAAGRAT
-TTTTTTTTCNNGTN-
 A C T G A C G T C G T A A C G T C G A T A C G T A C T G C G A T C G T A A G T C C G T A C G T A A C T G C T G A C G T A C G A T
A C G T G A C T G C A T C A G T C G A T A G C T A G C T G C A T G C A T A G T C T G A C G T C A A C T G G A C T C G T A A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GKWTTTKWWCAAGRAT
ANATTTTTGCAANTN-
 A C T G A C G T C G T A A C G T C G A T A C G T A C T G C G A T C G T A A G T C C G T A C G T A A C T G C T G A C G T A C G A T
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:3
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GKWTTTKWWCAAGRAT
---NTTTTACGAGN--
 A C T G A C G T C G T A A C G T C G A T A C G T A C T G C G A T C G T A A G T C C G T A C G T A A C T G C T G A C G T A C G A T
A C G T A C G T A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GKWTTTKWWCAAGRAT-
-NAATTTTACGAGNTNN
 A C T G A C G T C G T A A C G T C G A T A C G T A C T G C G A T C G T A A G T C C G T A C G T A A C T G C T G A C G T A C G A T A C G T
A C G T G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PB0182.1_Srf_2/Jaspar

Match Rank:5
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GKWTTTKWWCAAGRAT
NNNNTTTTTTTTTNAAC---
 A C G T A C G T A C G T A C G T A C T G A C G T C G T A A C G T C G A T A C G T A C T G C G A T C G T A A G T C C G T A C G T A A C T G C T G A C G T A C G A T
C G A T C G T A T C G A A C G T C A G T C A G T C A G T C G A T A C G T A C G T A C G T G A C T G A C T G C A T G C T A T G C A A T G C A C G T A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GKWTTTKWWCAAGRAT-
-ANATTTTACGAGNNNN
 A C T G A C G T C G T A A C G T C G A T A C G T A C T G C G A T C G T A A G T C C G T A C G T A A C T G C T G A C G T A C G A T A C G T
A C G T G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

PB0139.1_Irf5_2/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GKWTTTKWWCAAGRAT---
----TTGACCGAGAATTCC
 A C T G A C G T C G T A A C G T C G A T A C G T A C T G C G A T C G T A A G T C C G T A C G T A A C T G C T G A C G T A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GKWTTTKWWCAAGRAT-
--ATTTGCATAACAATG
 A C T G A C G T C G T A A C G T C G A T A C G T A C T G C G A T C G T A A G T C C G T A C G T A A C T G C T G A C G T A C G A T A C G T
A C G T A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

PB0181.1_Spdef_2/Jaspar

Match Rank:9
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:GKWTTTKWWCAAGRAT------
------CTACTAGGATGTNNTN
 A C T G A C G T C G T A A C G T C G A T A C G T A C T G C G A T C G T A A G T C C G T A C G T A A C T G C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

PB0067.1_Sox18_1/Jaspar

Match Rank:10
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GKWTTTKWWCAAGRAT----
----NNTNANAACAATTNNA
 A C T G A C G T C G T A A C G T C G A T A C G T A C T G C G A T C G T A A G T C C G T A C G T A A C T G C T G A C G T A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A