Information for 6-TTTTATAAATTCT (Motif 7)

A C G T A C G T A C G T A C G T G T C A A C G T G T C A G T C A C G T A A C G T A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A C G T A A C G T A C G T A C G T C G T A A C G T G T C A C G T A C G T A C G T A
p-value:1e-11
log p-value:-2.539e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.2 +/- 28.3bp
Average Position of motif in Background57.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATAAATTCT
NNANTTTTATTGGNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C G T G T C A G T C A C G T A A C G T A C G T A G T C A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------TTTTATAAATTCT
NNNNNNCTTTTATAN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C G T G T C A G T C A C G T A A C G T A C G T A G T C A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------TTTTATAAATTCT
NNNNNNCTTTTATAN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C G T G T C A G T C A C G T A A C G T A C G T A G T C A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATAAATTCT
NGANTTTTATGGCTCN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C G T G T C A G T C A C G T A A C G T A C G T A G T C A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TTTTATAAATTCT
TTTTATTRGN---
 A C G T A C G T A C G T A C G T G T C A A C G T G T C A G T C A C G T A A C G T A C G T A G T C A C G T
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T A C G T

PH0095.1_Lhx5/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATAAATTCT
ANNATTTAATTAATTNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C G T G T C A G T C A C G T A A C G T A C G T A G T C A C G T
T C G A C A T G C A G T C G T A C G A T G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T C A G T G A T C A T C G

PH0093.1_Lhx3/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATAAATTCT
NNTATTTAATTAATTNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C G T G T C A G T C A C G T A A C G T A C G T A G T C A C G T
T G C A C A G T C A G T G C T A G C A T G A C T G A C T C T G A C G T A C G A T A G C T C T G A C T G A A G C T C A G T G C A T A T G C

PH0149.1_Pou3f4/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTTTATAAATTCT--
GANTTAATTAATTAANN
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C G T G T C A G T C A C G T A A C G T A C G T A G T C A C G T A C G T A C G T
C T A G G C T A G T C A G A C T C G A T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A C G T A A C G T G A C T

ONECUT3/MA0757.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TTTTATAAATTCT--
-NTTATTGATTTTTT
 A C G T A C G T A C G T A C G T G T C A A C G T G T C A G T C A C G T A A C G T A C G T A G T C A C G T A C G T A C G T
A C G T C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T

PH0142.1_Pou1f1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTTTATAAATTCT--
GANTTAATTAATTANNN
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C G T G T C A G T C A C G T A A C G T A C G T A G T C A C G T A C G T A C G T
T A C G G C T A G A T C G C A T C G A T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G T C A G C T A A G C T G A T C