Information for 13-YCAGSTKCCTGGCCCA (Motif 26)

A G T C G T A C C G T A C T A G A T G C C G A T C A T G T A G C A G T C A G C T A C T G C A T G G T A C G T A C G T A C G C T A
Reverse Opposite:
C G A T A C T G A C T G C A T G G T A C T A G C C T G A T C A G A T C G G T A C G C T A T A C G A G T C G C A T C A T G C T A G
p-value:1e-8
log p-value:-1.926e+01
Information Content per bp:1.621
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.15%
Number of Background Sequences with motif366.2
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets55.9 +/- 25.8bp
Average Position of motif in Background49.0 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.51
Offset:0
Orientation:forward strand
Alignment:YCAGSTKCCTGGCCCA
CTTGGCANNNTGCCAA
 A G T C G T A C C G T A C T A G A T G C C G A T C A T G T A G C A G T C A G C T A C T G C A T G G T A C G T A C G T A C G C T A
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:2
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:YCAGSTKCCTGGCCCA
-NAGGTCANTGACCT-
 A G T C G T A C C G T A C T A G A T G C C G A T C A T G T A G C A G T C A G C T A C T G C A T G G T A C G T A C G T A C G C T A
A C G T T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:YCAGSTKCCTGGCCCA
-------CTAGGCCT-
 A G T C G T A C C G T A C T A G A T G C C G A T C A T G T A G C A G T C A G C T A C T G C A T G G T A C G T A C G T A C G C T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:YCAGSTKCCTGGCCCA
---------TGACCT-
 A G T C G T A C C G T A C T A G A T G C C G A T C A T G T A G C A G T C A G C T A C T G C A T G G T A C G T A C G T A C G C T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:YCAGSTKCCTGGCCCA-----
-----NNNNTGACCCGGCGCG
 A G T C G T A C C G T A C T A G A T G C C G A T C A T G T A G C A G T C A G C T A C T G C A T G G T A C G T A C G T A C G C T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.49
Offset:8
Orientation:reverse strand
Alignment:YCAGSTKCCTGGCCCA--
--------CTGTTCCTGG
 A G T C G T A C C G T A C T A G A T G C C G A T C A T G T A G C A G T C A G C T A C T G C A T G G T A C G T A C G T A C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:7
Score:0.49
Offset:3
Orientation:forward strand
Alignment:YCAGSTKCCTGGCCCA
---CGTGGGTGGTCC-
 A G T C G T A C C G T A C T A G A T G C C G A T C A T G T A G C A G T C A G C T A C T G C A T G G T A C G T A C G T A C G C T A
A C G T A C G T A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.49
Offset:8
Orientation:forward strand
Alignment:YCAGSTKCCTGGCCCA
--------TTGGCA--
 A G T C G T A C C G T A C T A G A T G C C G A T C A T G T A G C A G T C A G C T A C T G C A T G G T A C G T A C G T A C G C T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:YCAGSTKCCTGGCCCA
-------NTTGGCANN
 A G T C G T A C C G T A C T A G A T G C C G A T C A T G T A G C A G T C A G C T A C T G C A T G G T A C G T A C G T A C G C T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.49
Offset:5
Orientation:forward strand
Alignment:YCAGSTKCCTGGCCCA
-----WDNCTGGGCA-
 A G T C G T A C C G T A C T A G A T G C C G A T C A T G T A G C A G T C A G C T A C T G C A T G G T A C G T A C G T A C G C T A
A C G T A C G T A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T