Information for 3-GCAAAKTTCC (Motif 6)

A T C G T A G C G T C A T G C A G T C A A C T G A C G T A C G T A G T C T A G C
Reverse Opposite:
A T C G A C T G G T C A G T C A G T A C C A G T A C G T A C G T A T C G T A G C
p-value:1e-12
log p-value:-2.854e+01
Information Content per bp:1.776
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.12%
Number of Background Sequences with motif239.6
Percentage of Background Sequences with motif0.50%
Average Position of motif in Targets47.8 +/- 24.9bp
Average Position of motif in Background47.7 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GCAAAKTTCC
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A T C G T A G C G T C A T G C A G T C A A C T G A C G T A C G T A G T C T A G C
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCAAAKTTCC
GGAAATTCCC
 A T C G T A G C G T C A T G C A G T C A A C T G A C G T A C G T A G T C T A G C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFATC1/MA0624.1/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GCAAAKTTCC---
---ATTTTCCATT
 A T C G T A G C G T C A T G C A G T C A A C T G A C G T A C G T A G T C T A G C A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------GCAAAKTTCC
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G T A G C G T C A T G C A G T C A A C T G A C G T A C G T A G T C T A G C
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

NFATC3/MA0625.1/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GCAAAKTTCC---
---ATTTTCCATT
 A T C G T A G C G T C A T G C A G T C A A C T G A C G T A C G T A G T C T A G C A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T C G A T G C A T A G C T G T A C A T G C C T G A G A C T G C A T

RELA/MA0107.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCAAAKTTCC
GGAAATTCCC
 A T C G T A G C G T C A T G C A G T C A A C T G A C G T A C G T A G T C T A G C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

PB0058.1_Sfpi1_1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCAAAKTTCC------
--NNACTTCCTCTTNN
 A T C G T A G C G T C A T G C A G T C A A C T G A C G T A C G T A G T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T G C T A C T G A A T G C C G A T C G A T A G T C A G T C A C G T A G T C G C A T G C A T G C T A T C G A

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCAAAKTTCC
ANGNAAAGGTCA
 A C G T A C G T A T C G T A G C G T C A T G C A G T C A A C T G A C G T A C G T A G T C T A G C
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------GCAAAKTTCC----
NNTTCTGGAANNTTCTAGAA
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G T A G C G T C A T G C A G T C A A C T G A C G T A C G T A G T C T A G C A C G T A C G T A C G T A C G T
A T G C T A G C A G C T A G C T T G A C G A C T T C A G T A C G G T C A C T G A A T C G T A G C G A C T C A G T A G T C A G C T T C G A A T C G T G C A T G C A

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GCAAAKTTCC----
----ATTTCCTGTN
 A T C G T A G C G T C A T G C A G T C A A C T G A C G T A C G T A G T C T A G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A G C T A C G T A C G T A G T C A G T C A C G T A T C G G A C T A T C G