Information for 17-AYYAKSTTACMAKCAS (Motif 28)

C G T A A G T C A G C T C G T A A C T G A T C G A C G T A C G T C G T A A G T C G T C A C G T A A C G T A G T C C G T A A T G C
Reverse Opposite:
A T C G C G A T A C T G G T C A A C G T A C G T A C T G A C G T C G T A C G T A T A C G T G A C A C G T C T G A T C A G A C G T
p-value:1e-6
log p-value:-1.567e+01
Information Content per bp:1.810
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.4 +/- 24.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AYYAKSTTACMAKCAS
GKVTCADRTTWC------
 A C G T A C G T C G T A A G T C A G C T C G T A A C T G A T C G A C G T A C G T C G T A A G T C G T C A C G T A A C G T A G T C C G T A A T G C
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:2
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AYYAKSTTACMAKCAS
GKMTCADRTTWC------
 A C G T A C G T C G T A A G T C A G C T C G T A A C T G A T C G A C G T A C G T C G T A A G T C G T C A C G T A A C G T A G T C C G T A A T G C
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:3
Score:0.54
Offset:8
Orientation:forward strand
Alignment:AYYAKSTTACMAKCAS
--------CCAATCAA
 C G T A A G T C A G C T C G T A A C T G A T C G A C G T A C G T C G T A A G T C G T C A C G T A A C G T A G T C C G T A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AYYAKSTTACMAKCAS
---NTTTTACGAGN--
 C G T A A G T C A G C T C G T A A C T G A T C G A C G T A C G T C G T A A G T C G T C A C G T A A C G T A G T C C G T A A T G C
A C G T A C G T A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T

HOXC12/MA0906.1/Jaspar

Match Rank:5
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AYYAKSTTACMAKCAS
---NTTTTACGACC--
 C G T A A G T C A G C T C G T A A C T G A T C G A C G T A C G T C G T A A G T C G T C A C G T A A C G T A G T C C G T A A T G C
A C G T A C G T A C G T C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C A C G T A C G T

STAT3/MA0144.2/Jaspar

Match Rank:6
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:AYYAKSTTACMAKCAS
-----TTTCCCAGAAN
 C G T A A G T C A G C T C G T A A C T G A T C G A C G T A C G T C G T A A G T C G T C A C G T A A C G T A G T C C G T A A T G C
A C G T A C G T A C G T A C G T A C G T G A C T A C G T A C G T G A T C A G T C G T A C C T G A C T A G T G C A C G T A T C A G

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AYYAKSTTACMAKCAS
CTTATCTCHMCATCT-
 C G T A A G T C A G C T C G T A A C T G A T C G A C G T A C G T C G T A A G T C G T C A C G T A A C G T A G T C C G T A A T G C
A T G C G A C T C G A T C G T A A C G T A G T C C G A T A G T C G A T C G T C A T A G C C G T A A C G T A G T C C G A T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AYYAKSTTACMAKCAS-
-ANATTTTACGAGNNNN
 C G T A A G T C A G C T C G T A A C T G A T C G A C G T A C G T C G T A A G T C G T C A C G T A A C G T A G T C C G T A A T G C A C G T
A C G T G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

HOXC11/MA0651.1/Jaspar

Match Rank:9
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:AYYAKSTTACMAKCAS
---NTTTTACGACC--
 C G T A A G T C A G C T C G T A A C T G A T C G A C G T A C G T C G T A A G T C G T C A C G T A A C G T A G T C C G T A A T G C
A C G T A C G T A C G T C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C A C G T A C G T

DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer

Match Rank:10
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----AYYAKSTTACMAKCAS
NWTGATTRGRTTAWN-----
 A C G T A C G T A C G T A C G T C G T A A G T C A G C T C G T A A C T G A T C G A C G T A C G T C G T A A G T C G T C A C G T A A C G T A G T C C G T A A T G C
C G T A G C A T C G A T C T A G C G T A A C G T A C G T C T G A T C A G C T A G A C G T A C G T G C T A C G T A G T A C A C G T A C G T A C G T A C G T A C G T