Information for 5-GCAGGGAAAGGCA (Motif 19)

A C T G A G T C C G T A C T A G A C T G C T A G C T G A C T G A C G T A A C T G A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A G T C A C G T A G C T A G C T A G T C A G T C A G T C A C G T C T A G G T A C
p-value:1e-8
log p-value:-1.901e+01
Information Content per bp:1.876
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.3 +/- 24.6bp
Average Position of motif in Background62.2 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GCAGGGAAAGGCA
---TGGAACAGMA
 A C T G A G T C C G T A C T A G A C T G C T A G C T G A C T G A C G T A A C T G A C T G A G T C C G T A
A C G T A C G T A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.58
Offset:7
Orientation:forward strand
Alignment:GCAGGGAAAGGCA-----
-------AAGGCAAGTGT
 A C T G A G T C C G T A C T A G A C T G C T A G C T G A C T G A C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCAGGGAAAGGCA
-TGGGGAAGGGCM
 A C T G A G T C C G T A C T A G A C T G C T A G C T G A C T G A C G T A A C T G A C T G A G T C C G T A
A C G T G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGGAAAGGCA
GAAAGTGAAAGT--
 A C G T A C T G A G T C C G T A C T A G A C T G C T A G C T G A C T G A C G T A A C T G A C T G A G T C C G T A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GCAGGGAAAGGCA
AGAAAGTGAAAGTGA
 A C G T A C G T A C T G A G T C C G T A C T A G A C T G C T A G C T G A C T G A C G T A A C T G A C T G A G T C C G T A
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

Nr2e1/MA0676.1/Jaspar

Match Rank:6
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GCAGGGAAAGGCA-
-----AAAAGTCAA
 A C T G A G T C C G T A C T A G A C T G C T A G C T G A C T G A C G T A A C T G A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GCAGGGAAAGGCA-----
---AGGGAAGTCATTTCT
 A C T G A G T C C G T A C T A G A C T G C T A G C T G A C T G A C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GCAGGGAAAGGCA
--DGGGYGKGGC-
 A C T G A G T C C G T A C T A G A C T G C T A G C T G A C T G A C G T A A C T G A C T G A G T C C G T A
A C G T A C G T C G T A C T A G A C T G A C T G G A C T C T A G C A G T C T A G C A T G G A T C A C G T

KLF5/MA0599.1/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GCAGGGAAAGGCA
--GGGGNGGGGC-
 A C T G A G T C C G T A C T A G A C T G C T A G C T G A C T G A C G T A A C T G A C T G A G T C C G T A
A C G T A C G T C T A G C T A G A C T G A C T G G A T C A C T G C A T G C T A G C T A G T G A C A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GCAGGGAAAGGCA
CCAGGAACAG---
 A C T G A G T C C G T A C T A G A C T G C T A G C T G A C T G A C G T A A C T G A C T G A G T C C G T A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T