Information for 7-GGAGGCCTCACAGAGG (Motif 12)

C T A G A T C G C G T A A C T G A C T G A G T C A G T C C G A T A G T C C G T A A T G C C T G A T A C G C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C C G A T A G T C A G C T A T C G A C G T C T A G C G T A A C T G C T A G A G T C A G T C A C G T A T G C G A T C
p-value:1e-9
log p-value:-2.169e+01
Information Content per bp:1.907
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.3 +/- 28.9bp
Average Position of motif in Background28.1 +/- 11.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:1
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GGAGGCCTCACAGAGG---
--AGGTCAACTAAAGGTCA
 C T A G A T C G C G T A A C T G A C T G A G T C A G T C C G A T A G T C C G T A A T G C C T G A T A C G C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GGAGGCCTCACAGAGG
--AGGCCTNG------
 C T A G A T C G C G T A A C T G A C T G A G T C A G T C C G A T A G T C C G T A A T G C C T G A T A C G C G T A A C T G A C T G
A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GGAGGCCTCACAGAGG
CTAGGCCT--------
 C T A G A T C G C G T A A C T G A C T G A G T C A G T C C G A T A G T C C G T A A T G C C T G A T A C G C G T A A C T G A C T G
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:4
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GGAGGCCTCACAGAGG
-CAGGCCNNGGCCNN-
 C T A G A T C G C G T A A C T G A C T G A G T C A G T C C G A T A G T C C G T A A T G C C T G A T A C G C G T A A C T G A C T G
A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C A C G T

RARA(var.2)/MA0730.1/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GGAGGCCTCACAGAGG---
--AGGTCATGCAAAGGTCA
 C T A G A T C G C G T A A C T G A C T G A G T C A G T C C G A T A G T C C G T A A T G C C T G A T A C G C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:GGAGGCCTCACAGAGG
--------AACAAAGG
 C T A G A T C G C G T A A C T G A C T G A G T C A G T C C G A T A G T C C G T A A T G C C T G A T A C G C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GGAGGCCTCACAGAGG----
--RGGTCADNNAGAGGTCAV
 C T A G A T C G C G T A A C T G A C T G A G T C A G T C C G A T A G T C C G T A A T G C C T G A T A C G C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-GGAGGCCTCACAGAGG
ARGAGGMCAAAATGW--
 A C G T C T A G A T C G C G T A A C T G A C T G A G T C A G T C C G A T A G T C C G T A A T G C C T G A T A C G C G T A A C T G A C T G
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T A C G T A C G T

GLIS3/MA0737.1/Jaspar

Match Rank:9
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GGAGGCCTCACAGAGG
-GACCCCCCACGAAG-
 C T A G A T C G C G T A A C T G A C T G A G T C A G T C C G A T A G T C C G T A A T G C C T G A T A C G C G T A A C T G A C T G
A C G T A C T G T C G A A G T C A G T C G A T C A G T C G T A C A G T C C T G A A G T C C T A G C G T A G T C A A T C G A C G T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:10
Score:0.48
Offset:2
Orientation:forward strand
Alignment:GGAGGCCTCACAGAGG---
--AGGTCACGGAGAGGTCA
 C T A G A T C G C G T A A C T G A C T G A G T C A G T C C G A T A G T C C G T A A T G C C T G A T A C G C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A