Information for 11-ARRTGCTAGVCACAGT (Motif 26)

C G T A C T G A C T A G A C G T C A T G A G T C G A C T C T G A C A T G T G A C T G A C G T C A A G T C C G T A A T C G A G C T
Reverse Opposite:
T C G A T A G C A C G T T C A G A C G T A C T G A C G T G T A C G A C T C T G A C T A G G T A C G T C A G A T C G A C T G C A T
p-value:1e-7
log p-value:-1.784e+01
Information Content per bp:1.597
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif2.00%
Number of Background Sequences with motif53.7
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets47.5 +/- 20.0bp
Average Position of motif in Background45.1 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.63
Offset:5
Orientation:forward strand
Alignment:ARRTGCTAGVCACAGT
-----CCAGGAACAG-
 C G T A C T G A C T A G A C G T C A T G A G T C G A C T C T G A C A T G T G A C T G A C G T C A A G T C C G T A A T C G A G C T
A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.57
Offset:5
Orientation:forward strand
Alignment:ARRTGCTAGVCACAGT
-----NAAACCACAG-
 C G T A C T G A C T A G A C G T C A T G A G T C G A C T C T G A C A T G T G A C T G A C G T C A A G T C C G T A A T C G A G C T
A C G T A C G T A C G T A C G T A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:3
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:ARRTGCTAGVCACAGT-
------AAACCACAGAN
 C G T A C T G A C T A G A C G T C A T G A G T C G A C T C T G A C A T G T G A C T G A C G T C A A G T C C G T A A T C G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

MEF2B/MA0660.1/Jaspar

Match Rank:4
Score:0.55
Offset:4
Orientation:forward strand
Alignment:ARRTGCTAGVCACAGT
----GCTATAAATAGC
 C G T A C T G A C T A G A C G T C A T G A G T C G A C T C T G A C A T G T G A C T G A C G T C A A G T C C G T A A T C G A G C T
A C G T A C G T A C G T A C G T C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.54
Offset:5
Orientation:forward strand
Alignment:ARRTGCTAGVCACAGT-
-----NWAACCACADNN
 C G T A C T G A C T A G A C G T C A T G A G T C G A C T C T G A C A T G T G A C T G A C G T C A A G T C C G T A A T C G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.54
Offset:10
Orientation:reverse strand
Alignment:ARRTGCTAGVCACAGT
----------CACAGN
 C G T A C T G A C T A G A C G T C A T G A G T C G A C T C T G A C A T G T G A C T G A C G T C A A G T C C G T A A T C G A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:ARRTGCTAGVCACAGT
------AAACCACAGC
 C G T A C T G A C T A G A C G T C A T G A G T C G A C T C T G A C A T G T G A C T G A C G T C A A G T C C G T A A T C G A G C T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

MEF2D/MA0773.1/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:forward strand
Alignment:ARRTGCTAGVCACAGT
----ACTATAAATAGA
 C G T A C T G A C T A G A C G T C A T G A G T C G A C T C T G A C A T G T G A C T G A C G T C A A G T C C G T A A T C G A G C T
A C G T A C G T A C G T A C G T C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:ARRTGCTAGVCACAGT
AGGTGNCAGACAG---
 C G T A C T G A C T A G A C G T C A T G A G T C G A C T C T G A C A T G T G A C T G A C G T C A A G T C C G T A A T C G A G C T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:ARRTGCTAGVCACAGT
AGGTGHCAGACA----
 C G T A C T G A C T A G A C G T C A T G A G T C G A C T C T G A C A T G T G A C T G A C G T C A A G T C C G T A A T C G A G C T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T