Information for 17-MTMAGCATGWCTG (Motif 40)

G T C A G A C T T G A C C G T A A C T G G A T C G T C A C A G T A C T G C G T A T G A C A C G T A C T G
Reverse Opposite:
G T A C C G T A A C T G G C A T T G A C G T C A C A G T C T A G G T A C G C A T A C T G C G T A A C G T
p-value:1e-8
log p-value:-1.929e+01
Information Content per bp:1.674
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif3.47%
Number of Background Sequences with motif301.6
Percentage of Background Sequences with motif0.70%
Average Position of motif in Targets42.8 +/- 21.3bp
Average Position of motif in Background51.9 +/- 37.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-MTMAGCATGWCTG
DCTCAGCAGG----
 A C G T G T C A G A C T T G A C C G T A A C T G G A T C G T C A C A G T A C T G C G T A T G A C A C G T A C T G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-MTMAGCATGWCTG-
GTCATGCHTGRCTGS
 A C G T G T C A G A C T T G A C C G T A A C T G G A T C G T C A C A G T A C T G C G T A T G A C A C G T A C T G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---MTMAGCATGWCTG
CCACACAGCAGGAGA-
 A C G T A C G T A C G T G T C A G A C T T G A C C G T A A C T G G A T C G T C A C A G T A C T G C G T A T G A C A C G T A C T G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---MTMAGCATGWCTG
GAGCACAGCAGGACA-
 A C G T A C G T A C G T G T C A G A C T T G A C C G T A A C T G G A T C G T C A C A G T A C T G C G T A T G A C A C G T A C T G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---MTMAGCATGWCTG
CCACACAGCAGGAGA-
 A C G T A C G T A C G T G T C A G A C T T G A C C G T A A C T G G A T C G T C A C A G T A C T G C G T A T G A C A C G T A C T G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

POL002.1_INR/Jaspar

Match Rank:6
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:MTMAGCATGWCTG-
------NNNANTGA
 G T C A G A C T T G A C C G T A A C T G G A T C G T C A C A G T A C T G C G T A T G A C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:MTMAGCATGWCTG-
----VBSYGTCTGG
 G T C A G A C T T G A C C G T A A C T G G A T C G T C A C A G T A C T G C G T A T G A C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---MTMAGCATGWCTG
BTVATTWGCATA----
 A C G T A C G T A C G T G T C A G A C T T G A C C G T A A C T G G A T C G T C A C A G T A C T G C G T A T G A C A C G T A C T G
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:MTMAGCATGWCTG-----
-NTTNTATGAATGTGNNC
 G T C A G A C T T G A C C G T A A C T G G A T C G T C A C A G T A C T G C G T A T G A C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.55
Offset:6
Orientation:forward strand
Alignment:MTMAGCATGWCTG-
------TWGTCTGV
 G T C A G A C T T G A C C G T A A C T G G A T C G T C A C A G T A C T G C G T A T G A C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G