Information for 8-ACAGCCAATGGGA (Motif 9)

G T C A A G T C C G T A A C T G A G T C A G T C G T C A C G T A C G A T A C T G C T A G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C A G T C C G T A A C G T A C G T A C T G A C T G A G T C A C G T A C T G A C G T
p-value:1e-10
log p-value:-2.496e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.0 +/- 20.0bp
Average Position of motif in Background41.9 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.75
Offset:2
Orientation:forward strand
Alignment:ACAGCCAATGGGA
--AGCCAATCGG-
 G T C A A G T C C G T A A C T G A G T C A G T C G T C A C G T A C G A T A C T G C T A G A C T G C G T A
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-ACAGCCAATGGGA
ACTAGCCAATCA--
 A C G T G T C A A G T C C G T A A C T G A G T C A G T C G T C A C G T A C G A T A C T G C T A G A C T G C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ACAGCCAATGGGA---
NNTNNACAATGGGANNN
 A C G T G T C A A G T C C G T A A C T G A G T C A G T C G T C A C G T A C G A T A C T G C T A G A C T G C G T A A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ACAGCCAATGGGA
AAATGGACCAATCAG-
 A C G T A C G T A C G T G T C A A G T C C G T A A C T G A G T C A G T C G T C A C G T A C G A T A C T G C T A G A C T G C G T A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ACAGCCAATGGGA
BCAGACWA-----
 G T C A A G T C C G T A A C T G A G T C A G T C G T C A C G T A C G A T A C T G C T A G A C T G C G T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:ACAGCCAATGGGA
--TGCCAA-----
 G T C A A G T C C G T A A C T G A G T C A G T C G T C A C G T A C G A T A C T G C T A G A C T G C G T A
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-ACAGCCAATGGGA
CACAGN--------
 A C G T G T C A A G T C C G T A A C T G A G T C A G T C G T C A C G T A C G A T A C T G C T A G A C T G C G T A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ACAGCCAATGGGA
CGTGCCAAG----
 G T C A A G T C C G T A A C T G A G T C A G T C G T C A C G T A C G A T A C T G C T A G A C T G C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:ACAGCCAATGGGA
-CAGCC-------
 G T C A A G T C C G T A A C T G A G T C A G T C G T C A C G T A C G A T A C T G C T A G A C T G C G T A
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:ACAGCCAATGGGA--
-CCGCCCAAGGGCAG
 G T C A A G T C C G T A A C T G A G T C A G T C G T C A C G T A C G A T A C T G C T A G A C T G C G T A A C G T A C G T
A C G T A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G