Information for 6-TGGCWTAGGY (Motif 19)

A C G T A C T G A C T G A G T C C G T A C G A T C G T A A C T G A C T G A G C T
Reverse Opposite:
C T G A A G T C A G T C A C G T C G T A C G A T A C T G A G T C A G T C C G T A
p-value:1e-8
log p-value:-2.012e+01
Information Content per bp:1.887
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif75.6
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets57.3 +/- 25.2bp
Average Position of motif in Background50.3 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TGGCWTAGGY
TTGGCA-----
 A C G T A C G T A C T G A C T G A G T C C G T A C G A T C G T A A C T G A C T G A G C T
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGGCWTAGGY
NTTGGCANN---
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G A T C G T A A C T G A C T G A G C T
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TGGCWTAGGY
GGTTGGCAT----
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G A T C G T A A C T G A C T G A G C T
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGGCWTAGGY--
TAGGGCAAAGGTCA
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G A T C G T A A C T G A C T G A G C T A C G T A C G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGGCWTAGGY
NNTTGGCANN---
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G A T C G T A A C T G A C T G A G C T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------TGGCWTAGGY
NGTAGGTTGGCATNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G A T C G T A A C T G A C T G A G C T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TGGCWTAGGY--
TGGGGCAAAGGTCA
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G A T C G T A A C T G A C T G A G C T A C G T A C G T
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGGCWTAGGY-
NGCCTNAGGCN
 A C G T A C T G A C T G A G T C C G T A C G A T C G T A A C T G A C T G A G C T A C G T
G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGGCWTAGGY-
TGCCTGAGGCN
 A C G T A C T G A C T G A G T C C G T A C G A T C G T A A C T G A C T G A G C T A C G T
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T

PB0161.1_Rxra_2/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGGCWTAGGY------
TCGCGAAGGTTGTACT
 A C G T A C T G A C T G A G T C C G T A C G A T C G T A A C T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T