Information for 3-GCYGCCAGCTGGRCTG (Motif 5)

A T C G A G T C A G T C C T A G A T G C T A G C C G T A A C T G A G T C C G A T A C T G A C T G C T A G A G T C C G A T A C T G
Reverse Opposite:
A G T C C G T A A C T G A G T C G T A C A G T C G C T A A C T G A G T C C G A T A C T G A T C G A G T C C T A G A C T G A T G C
p-value:1e-11
log p-value:-2.653e+01
Information Content per bp:1.806
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.8 +/- 13.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCYGCCAGCTGGRCTG
GGCCYCCTGCTGDGH--
A C G T A T C G A G T C A G T C C T A G A T G C T A G C C G T A A C T G A G T C C G A T A C T G A C T G C T A G A G T C C G A T A C T G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCYGCCAGCTGGRCTG
-CCCCCTGCTGTG---
A T C G A G T C A G T C C T A G A T G C T A G C C G T A A C T G A G T C C G A T A C T G A C T G C T A G A G T C C G A T A C T G
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCYGCCAGCTGGRCTG
-TCNCCTGCTGNGNNN
A T C G A G T C A G T C C T A G A T G C T A G C C G T A A C T G A G T C C G A T A C T G A C T G C T A G A G T C C G A T A C T G
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCYGCCAGCTGGRCTG
-TNTCCTGCTGTGNNG
A T C G A G T C A G T C C T A G A T G C T A G C C G T A A C T G A G T C C G A T A C T G A C T G C T A G A G T C C G A T A C T G
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:5
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GCYGCCAGCTGGRCTG
----CCAGCTGTTN--
A T C G A G T C A G T C C T A G A T G C T A G C C G T A A C T G A G T C C G A T A C T G A C T G C T A G A G T C C G A T A C T G
A C G T A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCYGCCAGCTGGRCTG
--NAHCAGCTGD----
A T C G A G T C A G T C C T A G A T G C T A G C C G T A A C T G A G T C C G A T A C T G A C T G C T A G A G T C C G A T A C T G
A C G T A C G T G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GCYGCCAGCTGGRCTG
----CCTGCTGAGH--
A T C G A G T C A G T C C T A G A T G C T A G C C G T A A C T G A G T C C G A T A C T G A C T G C T A G A G T C C G A T A C T G
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCYGCCAGCTGGRCTG
-NNTCCTGCTGTGNNN
A T C G A G T C A G T C C T A G A T G C T A G C C G T A A C T G A G T C C G A T A C T G A C T G C T A G A G T C C G A T A C T G
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCYGCCAGCTGGRCTG
--CAGCAGCTGN----
A T C G A G T C A G T C C T A G A T G C T A G C C G T A A C T G A G T C C G A T A C T G A C T G C T A G A G T C C G A T A C T G
A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T A C G T

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GCYGCCAGCTGGRCTG
----VCAGCTGBNN--
A T C G A G T C A G T C C T A G A T G C T A G C C G T A A C T G A G T C C G A T A C T G A C T G C T A G A G T C C G A T A C T G
A C G T A C G T A C G T A C G T T G A C A T G C C G T A A T C G A T G C C A G T C A T G A C T G A G T C G T A C A C G T A C G T