Information for 1-CTCCGGCTGG (Motif 4)

A G T C A G C T T A G C T G A C C T A G T A C G T A G C C G A T T A C G T A C G
Reverse Opposite:
A T G C A T G C G C T A A T C G A T G C G A T C A C T G A T C G T C G A T C A G
p-value:1e-11
log p-value:-2.724e+01
Information Content per bp:1.558
Number of Target Sequences with motif351.0
Percentage of Target Sequences with motif42.75%
Number of Background Sequences with motif14534.5
Percentage of Background Sequences with motif31.11%
Average Position of motif in Targets48.9 +/- 24.8bp
Average Position of motif in Background50.1 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CTCCGGCTGG--
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A G T C A G C T T A G C T G A C C T A G T A C G T A G C C G A T T A C G T A C G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CTCCGGCTGG-
CCCCCTGCTGTG
 A C G T A G T C A G C T T A G C T G A C C T A G T A C G T A G C C G A T T A C G T A C G A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CTCCGGCTGG----
TCNCCTGCTGNGNNN
 A C G T A G T C A G C T T A G C T G A C C T A G T A C G T A G C C G A T T A C G T A C G A C G T A C G T A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTCCGGCTGG----
TNTCCTGCTGTGNNG
 A C G T A G T C A G C T T A G C T G A C C T A G T A C G T A G C C G A T T A C G T A C G A C G T A C G T A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTCCGGCTGG
CAGCAGCTGN
 A G T C A G C T T A G C T G A C C T A G T A C G T A G C C G A T T A C G T A C G
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTCCGGCTGG--
--CCTGCTGAGH
 A G T C A G C T T A G C T G A C C T A G T A C G T A G C C G A T T A C G T A C G A C G T A C G T
A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTCCGGCTGG
--CTGTCTGG
 A G T C A G C T T A G C T G A C C T A G T A C G T A G C C G A T T A C G T A C G
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:8
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CTCCGGCTGG--
--CCAGCTGTTN
 A G T C A G C T T A G C T G A C C T A G T A C G T A G C C G A T T A C G T A C G A C G T A C G T
A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:9
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CTCCGGCTGG--
--VCAGCTGBNN
 A G T C A G C T T A G C T G A C C T A G T A C G T A G C C G A T T A C G T A C G A C G T A C G T
A C G T A C G T T G A C A T G C C G T A A T C G A T G C C A G T C A T G A C T G A G T C G T A C

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:10
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CTCCGGCTGG--
--HCAGCTGDTN
 A G T C A G C T T A G C T G A C C T A G T A C G T A G C C G A T T A C G T A C G A C G T A C G T
A C G T A C G T G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T