Information for 8-CTCATCAGGCTGA (Motif 15)

A G T C A G C T A G T C G T C A A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C T G G T C A A C G T A C T G C T G A A C T G
p-value:1e-9
log p-value:-2.157e+01
Information Content per bp:1.924
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.2 +/- 17.7bp
Average Position of motif in Background37.8 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTCATCAGGCTGA
CACAGCAGGGGG-
 A G T C A G C T A G T C G T C A A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C T G C G T A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTCATCAGGCTGA
DCTCAGCAGG----
 A C G T A G T C A G C T A G T C G T C A A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C T G C G T A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CTCATCAGGCTGA
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C A G C T A G T C G T C A A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C T G C G T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTCATCAGGCTGA-
DCHCAGCAGGRGGCC
 A C G T A G T C A G C T A G T C G T C A A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C T G C G T A A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CTCATCAGGCTGA
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C A G C T A G T C G T C A A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C T G C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CTCATCAGGCTGA
GAGCACAGCAGGACA-
 A C G T A C G T A C G T A G T C A G C T A G T C G T C A A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C T G C G T A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CTCATCAGGCTGA
ATTTCCCAGVAKSCY--
 A C G T A C G T A C G T A C G T A G T C A G C T A G T C G T C A A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C T G C G T A
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTCATCAGGCTGA
CGCCTCAGGCA--
 A G T C A G C T A G T C G T C A A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C T G C G T A
G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTCATCAGGCTGA
AGCCTCAGGCA--
 A G T C A G C T A G T C G T C A A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C T G C G T A
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTCATCAGGCTGA
NTNGCCTCAGGCNNN
 A C G T A C G T A G T C A G C T A G T C G T C A A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C T G C G T A
G C T A C A G T G A C T A T C G A G T C A G T C A G C T T A G C T C G A T C A G A C T G T A G C C G T A C G T A C G A T