Information for 8-GGTTGTTAAG (Motif 27)

A C T G A T C G C G A T A C G T C T A G A C G T A C G T C G T A C G T A A C T G
Reverse Opposite:
A G T C C G A T C G A T G T C A G T C A A G T C C G T A C G T A A T G C A G T C
p-value:1e-8
log p-value:-1.885e+01
Information Content per bp:1.794
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif24.2
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets40.8 +/- 22.1bp
Average Position of motif in Background49.4 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GGTTGTTAAG---
NNCGTTGCTATGGNN
 A C G T A C G T A C T G A T C G C G A T A C G T C T A G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:2
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------GGTTGTTAAG-------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G C G A T A C G T C T A G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GGTTGTTAAG---
NCCGTTGCTANGNGN
 A C G T A C G T A C T G A T C G C G A T A C G T C T A G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GGTTGTTAAG-
CTGTTGCTAGGS
 A C G T A C T G A T C G C G A T A C G T C T A G A C G T A C G T C G T A C G T A A C T G A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0123.1_Foxl1_2/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGTTGTTAAG----
NNTTTTGTTTTGATNT
 A C G T A C G T A C T G A T C G C G A T A C G T C T A G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGTTGTTAAG-----
KGTTGCTAGGMAACA
 A C T G A T C G C G A T A C G T C T A G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGTTGTTAAG--------
-NTNNTTAAGTGGTTANN
 A C T G A T C G C G A T A C G T C T A G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGTTGTTAAG--------
-NTNNTTAAGTGGNTNAN
 A C T G A T C G C G A T A C G T C T A G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

PB0120.1_Foxj1_2/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GGTTGTTAAG----
GTNTTGTTGTGANNT
 A C G T A C T G A T C G C G A T A C G T C T A G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GGTTGTTAAG----
-----TTAAGTGGN
 A C T G A T C G C G A T A C G T C T A G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T