Information for 15-CCCATTAAGCCAG (Motif 20)

A G T C G A T C G A T C C G T A A C G T C A G T C T G A G T C A A T C G T G A C T A G C C G T A T A C G
Reverse Opposite:
A T G C A C G T A C T G A C T G A T G C A C G T A G C T G T C A C G T A C G A T C A T G C T A G A C T G
p-value:1e-9
log p-value:-2.106e+01
Information Content per bp:1.748
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif11.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.4 +/- 14.0bp
Average Position of motif in Background54.8 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BSX/MA0876.1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCCATTAAGCCAG
CCAATTAA-----
 A G T C G A T C G A T C C G T A A C G T C A G T C T G A G T C A A T C G T G A C T A G C C G T A T A C G
T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T A C G T A C G T A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCCATTAAGCCAG
CTAATTAA-----
 A G T C G A T C G A T C C G T A A C G T C A G T C T G A G T C A A T C G T G A C T A G C C G T A T A C G
A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCCATTAAGCCAG
GGCCATTAAC----
 A C G T A G T C G A T C G A T C C G T A A C G T C A G T C T G A G T C A A T C G T G A C T A G C C G T A T A C G
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCCATTAAGCCAG
CTAATTAA-----
 A G T C G A T C G A T C C G T A A C G T C A G T C T G A G T C A A T C G T G A C T A G C C G T A T A C G
T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T A C G T A C G T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCCATTAAGCCAG
-YCATTAMC----
 A G T C G A T C G A T C C G T A A C G T C A G T C T G A G T C A A T C G T G A C T A G C C G T A T A C G
A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T A C G T A C G T

PH0175.1_Vax2/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCCATTAAGCCAG
GTGCACTAATTAAGAC--
 A C G T A C G T A C G T A C G T A C G T A G T C G A T C G A T C C G T A A C G T C A G T C T G A G T C A A T C G T G A C T A G C C G T A T A C G
A C T G C G A T T A C G A T G C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C G T A T C G A A C T G T C G A T A G C A C G T A C G T

GSX2/MA0893.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCCATTAAGCCAG
ACTAATTAAA----
 A C G T A G T C G A T C G A T C C G T A A C G T C A G T C T G A G T C A A T C G T G A C T A G C C G T A T A C G
G T C A A T G C G A C T G T C A C G T A G C A T G C A T G C T A T C G A G T C A A C G T A C G T A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCCATTAAGCCAG
CCAATTAA-----
 A G T C G A T C G A T C C G T A A C G T C A G T C T G A G T C A A T C G T G A C T A G C C G T A T A C G
T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T A C G T A C G T A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCCATTAAGCCAG
GTAATTAA-----
 A G T C G A T C G A T C C G T A A C G T C A G T C T G A G T C A A T C G T G A C T A G C C G T A T A C G
T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A A C G T A C G T A C G T A C G T A C G T

LHX2/MA0700.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCCATTAAGCCAG
ACTAATTAAC----
 A C G T A G T C G A T C G A T C C G T A A C G T C A G T C T G A G T C A A T C G T G A C T A G C C G T A T A C G
T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C A C G T A C G T A C G T A C G T