Information for 3-GCAAGGGCAGCAG (Motif 6)

A C T G A T G C C T G A C G T A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A A C T G
Reverse Opposite:
G T A C A C G T A C T G A G T C A C G T A C T G A G T C A G T C A G T C A C G T A G C T A T C G A G T C
p-value:1e-13
log p-value:-2.998e+01
Information Content per bp:1.941
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.3 +/- 13.3bp
Average Position of motif in Background50.4 +/- 11.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCAAGGGCAGCAG
-CAAGGHCANV--
 A C T G A T G C C T G A C G T A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A A C T G
A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCAAGGGCAGCAG
AAGTTCAAGGTCAGC--
 A C G T A C G T A C G T A C G T A C T G A T G C C T G A C G T A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A A C T G
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T A C G T

Spz1/MA0111.1/Jaspar

Match Rank:3
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GCAAGGGCAGCAG-
---AGGGTAACAGC
 A C T G A T G C C T G A C G T A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A A C T G A C G T
A C G T A C G T A C G T C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCAAGGGCAGCAG
BTCAAGGTCA----
 A C G T A C T G A T G C C T G A C G T A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A A C T G
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCAAGGGCAGCAG
NTCAAGGTCA----
 A C G T A C T G A T G C C T G A C G T A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A A C T G
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCAAGGGCAGCAG
TCAAGGTCAN---
 A C T G A T G C C T G A C G T A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A A C T G
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCAAGGGCAGCAG
CAAAGGTCAG---
 A C T G A T G C C T G A C G T A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A A C T G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCAAGGGCAGCAG
-TNNGGGCAG---
 A C T G A T G C C T G A C G T A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A A C T G
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCAAGGGCAGCAG
TCAAGGTCAT---
 A C T G A T G C C T G A C G T A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A A C T G
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCAAGGGCAGCAG-----
-NNNNAGCAGCTGCTGAN
 A C T G A T G C C T G A C G T A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G