Information for 11-AATTGAATGA (Motif 9)

G T C A G C T A A C G T G A C T T A C G G C T A C G T A G C A T T A C G C G T A
Reverse Opposite:
A C G T A T G C C G T A G A C T C A G T A T G C C G T A C G T A C G A T C A G T
p-value:1e-8
log p-value:-1.938e+01
Information Content per bp:1.690
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.5 +/- 32.8bp
Average Position of motif in Background28.4 +/- 12.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----AATTGAATGA--
AATCAATTCAATAATT
 A C G T A C G T A C G T A C G T G T C A G C T A A C G T G A C T T A C G G C T A C G T A G C A T T A C G C G T A A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AATTGAATGA----
TAATTCAATGAAGTG
 A C G T G T C A G C T A A C G T G A C T T A C G G C T A C G T A G C A T T A C G C G T A A C G T A C G T A C G T A C G T
G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G

PB0028.1_Hbp1_1/Jaspar

Match Rank:3
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-AATTGAATGA-----
ACTATGAATGAATGAT
 A C G T G T C A G C T A A C G T G A C T T A C G G C T A C G T A G C A T T A C G C G T A A C G T A C G T A C G T A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

Phox2b/MA0681.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AATTGAATGA
TAATTAAATTA
 A C G T G T C A G C T A A C G T G A C T T A C G G C T A C G T A G C A T T A C G C G T A
G C A T C G T A C T G A A G C T A G C T C T G A T C G A C T G A A G C T G A C T C G T A

PHOX2A/MA0713.1/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AATTGAATGA
TAATTAAATTA
 A C G T G T C A G C T A A C G T G A C T T A C G G C T A C G T A G C A T T A C G C G T A
G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A

PROP1/MA0715.1/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AATTGAATGA
TAATTTAATTA
 A C G T G T C A G C T A A C G T G A C T T A C G G C T A C G T A G C A T T A C G C G T A
G C A T C G T A C T G A G C A T G A C T C G A T G T C A C T G A C G A T G A C T C G T A

PBX1/MA0070.1/Jaspar

Match Rank:7
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AATTGAATGA---
-TTTGATTGATGN
 G T C A G C T A A C G T G A C T T A C G G C T A C G T A G C A T T A C G C G T A A C G T A C G T A C G T
A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

PH0009.1_Bsx/Jaspar

Match Rank:8
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----AATTGAATGA-
CAGGTAATTACCTCAG
 A C G T A C G T A C G T A C G T A C G T G T C A G C T A A C G T G A C T T A C G G C T A C G T A G C A T T A C G C G T A A C G T
T G A C T G C A C T A G C A T G G A C T T G C A G T C A A C G T A C G T C T G A A T G C G A T C A G C T T A G C C T G A C T A G

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AATTGAATGA
YTAATYNRATTA
 A C G T A C G T G T C A G C T A A C G T G A C T T A C G G C T A C G T A G C A T T A C G C G T A
G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A

DUX4/MA0468.1/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AATTGAATGA
TAATTTAATCA
 A C G T G T C A G C T A A C G T G A C T T A C G G C T A C G T A G C A T T A C G C G T A
G C A T C T G A C G T A G A C T A G C T A G C T G T C A C G T A A C G T A G T C C G T A