Information for 8-TGSTGGACAGAGAGSA (Motif 4)

A C G T A C T G A T G C A G C T A T C G A C T G C G T A A G T C C G T A A C T G C G T A A T C G C G T A T A C G A T C G C T G A
Reverse Opposite:
G A C T A T G C A T G C G C A T A T G C A C G T A G T C C G A T A C T G A C G T A G T C A T G C C T G A A T C G A G T C C G T A
p-value:1e-18
log p-value:-4.274e+01
Information Content per bp:1.773
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif10.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets43.4 +/- 24.6bp
Average Position of motif in Background42.2 +/- 17.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGSTGGACAGAGAGSA
NTGATTGACAGN-----
 A C G T A C G T A C T G A T G C A G C T A T C G A C T G C G T A A G T C C G T A A C T G C G T A A T C G C G T A T A C G A T C G C T G A
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGSTGGACAGAGAGSA
AGGTGNCAGACAG------
 A C G T A C G T A C G T A C G T A C T G A T G C A G C T A T C G A C T G C G T A A G T C C G T A A C T G C G T A A T C G C G T A T A C G A T C G C T G A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGSTGGACAGAGAGSA
TGAGTGACAGSC----
 A C G T A C T G A T G C A G C T A T C G A C T G C G T A A G T C C G T A A C T G C G T A A T C G C G T A T A C G A T C G C T G A
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGSTGGACAGAGAGSA
BTGABTGACAGS-----
 A C G T A C G T A C T G A T G C A G C T A T C G A C T G C G T A A G T C C G T A A C T G C G T A A T C G C G T A T A C G A T C G C T G A
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TGSTGGACAGAGAGSA
AGGTGHCAGACA-------
 A C G T A C G T A C G T A C G T A C T G A T G C A G C T A T C G A C T G C G T A A G T C C G T A A C T G C G T A A T C G C G T A T A C G A T C G C T G A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TGSTGGACAGAGAGSA
---TTGACAGC-----
 A C G T A C T G A T G C A G C T A T C G A C T G C G T A A G T C C G T A A C T G C G T A A T C G C G T A T A C G A T C G C T G A
A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TGSTGGACAGAGAGSA
---TTGACAG------
 A C G T A C T G A T G C A G C T A T C G A C T G C G T A A G T C C G T A A C T G C G T A A T C G C G T A T A C G A T C G C T G A
A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TGSTGGACAGAGAGSA
---TTGACAGG-----
 A C G T A C T G A T G C A G C T A T C G A C T G C G T A A G T C C G T A A C T G C G T A A T C G C G T A T A C G A T C G C T G A
A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:TGSTGGACAGAGAGSA
-----CACAGN-----
 A C G T A C T G A T G C A G C T A T C G A C T G C G T A A G T C C G T A A C T G C G T A A T C G C G T A T A C G A T C G C T G A
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:TGSTGGACAGAGAGSA
---GGAACAAAGR---
 A C G T A C T G A T G C A G C T A T C G A C T G C G T A A G T C C G T A A C T G C G T A A T C G C G T A T A C G A T C G C T G A
A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T