Information for 14-AGACAACCCA (Motif 13)

C G T A A C T G C G T A A G T C C G T A C G T A A G T C A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A C T G A C G T A C G T A C T G A C G T A G T C A C G T
p-value:1e-5
log p-value:-1.371e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.2 +/- 34.0bp
Average Position of motif in Background37.5 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:AGACAACCCA--
GGACCACCCACG
 C G T A A C T G C G T A A G T C C G T A C G T A A G T C A G T C A G T C C G T A A C G T A C G T
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G

PB0098.1_Zfp410_1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AGACAACCCA-----
NNNTCCATCCCATAANN
 A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGACAACCCA
BCAGACWA----
 A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C A G T C A G T C C G T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AGACAACCCA---
CATAAGACCACCATTAC
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C A G T C A G T C C G T A A C G T A C G T A C G T
A G T C C G A T C A G T C T G A T G C A A C T G G T C A G A T C A T G C G T C A G A T C G A T C G C T A A C G T C A G T C T G A A G C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGACAACCCA
CCAGACRSVB--
 A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C A G T C A G T C C G T A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

ZBTB7B/MA0694.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGACAACCCA-
GCGACCACCGAA
 A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C A G T C A G T C C G T A A C G T
C T A G T A G C C T A G G T C A T G A C A T G C G T C A G T A C A G T C T C A G G C T A G T C A

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------AGACAACCCA
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C A G T C A G T C C G T A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGACAACCCA
CCAGACAG----
 A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C A G T C A G T C C G T A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AGACAACCCA--
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A C G T A A G T C A G T C A G T C C G T A A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

GLIS1/MA0735.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGACAACCCA------
AGACCCCCCACGAAGC
 C G T A A C T G C G T A A G T C C G T A C G T A A G T C A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G T C A A C T G C G T A A T G C G T A C A T G C T A G C A G T C T G A C C T G A A G T C C A T G C G T A G C T A C A T G A T G C