Information for 6-YATCTAAGCCACT (Motif 3)

A G T C G C T A A C G T A T G C A C G T C G T A C G T A C T A G A T G C G T A C C G T A A T G C C G A T
Reverse Opposite:
C G T A A T C G C G A T A C T G A T C G A G T C A C G T G C A T C G T A A T C G C G T A C G A T T C A G
p-value:1e-14
log p-value:-3.447e+01
Information Content per bp:1.773
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif6.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.1 +/- 25.8bp
Average Position of motif in Background38.6 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:YATCTAAGCCACT-
---CTAATCCTCTT
 A G T C G C T A A C G T A T G C A C G T C G T A C G T A C T A G A T G C G T A C C G T A A T G C C G A T A C G T
A C G T A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--YATCTAAGCCACT
CTTATCTCHMCATCT
 A C G T A C G T A G T C G C T A A C G T A T G C A C G T C G T A C G T A C T A G A T G C G T A C C G T A A T G C C G A T
A T G C G A C T C G A T C G T A A C G T A G T C C G A T A G T C G A T C G T C A T A G C C G T A A C G T A G T C C G A T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:YATCTAAGCCACT
--GCTAATCC---
 A G T C G C T A A C G T A T G C A C G T C G T A C G T A C T A G A T G C G T A C C G T A A T G C C G A T
A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:4
Score:0.59
Offset:5
Orientation:forward strand
Alignment:YATCTAAGCCACT--
-----AAACCACANN
 A G T C G C T A A C G T A T G C A C G T C G T A C G T A C T A G A T G C G T A C C G T A A T G C C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

RHOXF1/MA0719.1/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:YATCTAAGCCACT
---ATAATCCC--
 A G T C G C T A A C G T A T G C A C G T C G T A C G T A C T A G A T G C G T A C C G T A A T G C C G A T
A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.57
Offset:4
Orientation:forward strand
Alignment:YATCTAAGCCACT
----TAATCCCN-
 A G T C G C T A A C G T A T G C A C G T C G T A C G T A C T A G A T G C G T A C C G T A A T G C C G A T
A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:YATCTAAGCCACT-------
----TAAGCCACTTGAAATT
 A G T C G C T A A C G T A T G C A C G T C G T A C G T A C T A G A T G C G T A C C G T A A T G C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

PH0115.1_Nkx2-6/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:YATCTAAGCCACT-------
----TAAGCCACTTAACATT
 A G T C G C T A A C G T A T G C A C G T C G T A C G T A C T A G A T G C G T A C C G T A A T G C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

PH0171.1_Nkx2-1/Jaspar

Match Rank:9
Score:0.56
Offset:4
Orientation:forward strand
Alignment:YATCTAAGCCACT-------
----TAAGCCACTTGAAATT
 A G T C G C T A A C G T A T G C A C G T C G T A C G T A C T A G A T G C G T A C C G T A A T G C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

RUNX1/MA0002.2/Jaspar

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:YATCTAAGCCACT---
-----AAACCACAGAN
 A G T C G C T A A C G T A T G C A C G T C G T A C G T A C T A G A T G C G T A C C G T A A T G C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C