Information for 19-RCAKAAAACGCAMCCC (Motif 21)

C T G A G T A C C G T A A C T G C G T A C G T A C G T A C T G A A G T C A C T G T A G C C G T A T G A C G T A C A G T C A G T C
Reverse Opposite:
C T A G A C T G A C T G A C T G C G A T A C T G T G A C C T A G A G C T A C G T C G A T A C G T T G A C C G A T A C T G G A C T
p-value:1e-9
log p-value:-2.103e+01
Information Content per bp:1.730
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif6.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets25.3 +/- 8.5bp
Average Position of motif in Background65.2 +/- 20.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-RCAKAAAACGCAMCCC
GTCATAAAAN-------
 A C G T C T G A G T A C C G T A A C T G C G T A C G T A C G T A C T G A A G T C A C T G T A G C C G T A T G A C G T A C A G T C A G T C
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---RCAKAAAACGCAMCCC
AAGCCATAAAA--------
 A C G T A C G T A C G T C T G A G T A C C G T A A C T G C G T A C G T A C G T A C T G A A G T C A C T G T A G C C G T A T G A C G T A C A G T C A G T C
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RCAKAAAACGCAMCCC
CCAATAAAAA-------
 A C G T C T G A G T A C C G T A A C T G C G T A C G T A C G T A C T G A A G T C A C T G T A G C C G T A T G A C G T A C A G T C A G T C
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--RCAKAAAACGCAMCCC
NCYAATAAAA--------
 A C G T A C G T C T G A G T A C C G T A A C T G C G T A C G T A C G T A C T G A A G T C A C T G T A G C C G T A T G A C G T A C A G T C A G T C
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RCAKAAAACGCAMCCC
GCAATAAAA--------
 A C G T C T G A G T A C C G T A A C T G C G T A C G T A C G T A C T G A A G T C A C T G T A G C C G T A T G A C G T A C A G T C A G T C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:6
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----RCAKAAAACGCAMCCC
AGAGCCATAAAATTCG----
 A C G T A C G T A C G T A C G T C T G A G T A C C G T A A C T G C G T A C G T A C G T A C T G A A G T C A C T G T A G C C G T A T G A C G T A C A G T C A G T C
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--RCAKAAAACGCAMCCC
CCYMATAAAA--------
 A C G T A C G T C T G A G T A C C G T A A C T G C G T A C G T A C G T A C T G A A G T C A C T G T A G C C G T A T G A C G T A C A G T C A G T C
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:8
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----RCAKAAAACGCAMCCC
ATTTGCATACAATGG-----
 A C G T A C G T A C G T A C G T C T G A G T A C C G T A A C T G C G T A C G T A C G T A C T G A A G T C A C T G T A G C C G T A T G A C G T A C A G T C A G T C
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--RCAKAAAACGCAMCCC
NGYCATAAAWCH------
 A C G T A C G T C T G A G T A C C G T A A C T G C G T A C G T A C G T A C T G A A G T C A C T G T A G C C G T A T G A C G T A C A G T C A G T C
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:RCAKAAAACGCAMCCC
GTATAAAAGGCGGGG-
 C T G A G T A C C G T A A C T G C G T A C G T A C G T A C T G A A G T C A C T G T A G C C G T A T G A C G T A C A G T C A G T C
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G A C G T