Information for 12-ATGGCCTGCCACTTTG (Motif 11)

G T C A C G A T A C T G C A T G G A T C G A T C C G A T A C T G T A G C A G T C C T G A A G T C G A C T A C G T A C G T A C T G
Reverse Opposite:
T G A C G T C A T C G A C T G A C T A G A G C T C T A G A C T G A G T C C G T A C A T G C A T G G A T C G T A C G C T A C A G T
p-value:1e-12
log p-value:-2.812e+01
Information Content per bp:1.676
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.58%
Number of Background Sequences with motif26.3
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets47.3 +/- 25.5bp
Average Position of motif in Background54.9 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:ATGGCCTGCCACTTTG
----GCNGCCATCTTG
 G T C A C G A T A C T G C A T G G A T C G A T C C G A T A C T G T A G C A G T C C T G A A G T C G A C T A C G T A C G T A C T G
A C G T A C G T A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

PH0141.1_Pknox2/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-ATGGCCTGCCACTTTG
AAGCACCTGTCAATAT-
 A C G T G T C A C G A T A C T G C A T G G A T C G A T C C G A T A C T G T A G C A G T C C T G A A G T C G A C T A C G T A C G T A C T G
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:ATGGCCTGCCACTTTG
--TGTCTGDCACCT--
 G T C A C G A T A C T G C A T G G A T C G A T C C G A T A C T G T A G C A G T C C T G A A G T C G A C T A C G T A C G T A C T G
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:ATGGCCTGCCACTTTG
----GCCGCCATCTTG
 G T C A C G A T A C T G C A T G G A T C G A T C C G A T A C T G T A G C A G T C C T G A A G T C G A C T A C G T A C G T A C T G
A C G T A C G T A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:ATGGCCTGCCACTTTG
-AGGCCTNG-------
 G T C A C G A T A C T G C A T G G A T C G A T C C G A T A C T G T A G C A G T C C T G A A G T C G A C T A C G T A C G T A C T G
A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-ATGGCCTGCCACTTTG
TACGCCCCGCCACTCTG
 A C G T G T C A C G A T A C T G C A T G G A T C G A T C C G A T A C T G T A G C A G T C C T G A A G T C G A C T A C G T A C G T A C T G
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:ATGGCCTGCCACTTTG
----CTTGGCAA----
 G T C A C G A T A C T G C A T G G A T C G A T C C G A T A C T G T A G C A G T C C T G A A G T C G A C T A C G T A C G T A C T G
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:ATGGCCTGCCACTTTG
-TTGCGTGCVA-----
 G T C A C G A T A C T G C A T G G A T C G A T C C G A T A C T G T A G C A G T C C T G A A G T C G A C T A C G T A C G T A C T G
A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.51
Offset:3
Orientation:forward strand
Alignment:ATGGCCTGCCACTTTG
---VGCTGWCAVB---
 G T C A C G A T A C T G C A T G G A T C G A T C C G A T A C T G T A G C A G T C C T G A A G T C G A C T A C G T A C G T A C T G
A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:ATGGCCTGCCACTTTG
-AGGCCTAG-------
 G T C A C G A T A C T G C A T G G A T C G A T C C G A T A C T G T A G C A G T C C T G A A G T C G A C T A C G T A C G T A C T G
A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T