Information for 5-TCAGKCCTTGARA (Motif 9)

C A G T T A G C C G T A A C T G A C T G A G T C A G T C A C G T A C G T C T A G C G T A C T A G C G T A
Reverse Opposite:
C G A T A G T C C G A T A G T C G T C A C G T A C T A G T A C G G T A C A G T C A C G T A T C G G C T A
p-value:1e-13
log p-value:-3.047e+01
Information Content per bp:1.760
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.51%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets42.7 +/- 22.9bp
Average Position of motif in Background49.8 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TCAGKCCTTGARA
--AGGCCTNG---
 C A G T T A G C C G T A A C T G A C T G A G T C A G T C A C G T A C G T C T A G C G T A C T A G C G T A
A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TCAGKCCTTGARA
CNTTAAGTACTTAANG
 A C G T A C G T A C G T C A G T T A G C C G T A A C T G A C T G A G T C A G T C A C G T A C G T C T A G C G T A C T A G C G T A
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TCAGKCCTTGARA
--TGACCTTGAN-
 C A G T T A G C C G T A A C T G A C T G A G T C A G T C A C G T A C G T C T A G C G T A C T A G C G T A
A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TCAGKCCTTGARA
--AGGCCTAG---
 C A G T T A G C C G T A A C T G A C T G A G T C A G T C A C G T A C G T C T A G C G T A C T A G C G T A
A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TCAGKCCTTGARA
TTAAGTGCTT----
 A C G T C A G T T A G C C G T A A C T G A C T G A G T C A G T C A C G T A C G T C T A G C G T A C T A G C G T A
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCAGKCCTTGARA--
GCTGACCTTGAACTN
 C A G T T A G C C G T A A C T G A C T G A G T C A G T C A C G T A C G T C T A G C G T A C T A G C G T A A C G T A C G T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

PH0116.1_Nkx2-9/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TCAGKCCTTGARA
NATTTAAGTACTTNAAA
 A C G T A C G T A C G T A C G T C A G T T A G C C G T A A C T G A C T G A G T C A G T C A C G T A C G T C T A G C G T A C T A G C G T A
C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TCAGKCCTTGARA
--TGACCTTGAV-
 C A G T T A G C C G T A A C T G A C T G A G T C A G T C A C G T A C G T C T A G C G T A C T A G C G T A
A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TCAGKCCTTGARA-
TACTAAGTACTTAAATG
 A C G T A C G T A C G T C A G T T A G C C G T A A C T G A C T G A G T C A G T C A C G T A C G T C T A G C G T A C T A G C G T A A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

POL002.1_INR/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TCAGKCCTTGARA
TCAGTCTT-----
 C A G T T A G C C G T A A C T G A C T G A G T C A G T C A C G T A C G T C T A G C G T A C T A G C G T A
C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T A C G T A C G T A C G T