Information for 10-CTTTTGGCAACTTCTC (Motif 15)

A G T C G A C T A G C T A C G T G A C T C T A G T A C G A G T C G C T A C T G A A G T C C G A T C A G T G A T C A C G T T A G C
Reverse Opposite:
A T C G C G T A C T A G G C T A C G T A C T A G A G C T C G A T T C A G A G T C A G T C C G T A C G T A C T G A C T G A T C A G
p-value:1e-9
log p-value:-2.296e+01
Information Content per bp:1.692
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif45.8
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets40.4 +/- 22.6bp
Average Position of motif in Background43.7 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTTTTGGCAACTTCTC
-NNTTGGCANN-----
 A G T C G A C T A G C T A C G T G A C T C T A G T A C G A G T C G C T A C T G A A G T C C G A T C A G T G A T C A C G T T A G C
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTTTTGGCAACTTCTC
--CTTGGCAA------
 A G T C G A C T A G C T A C G T G A C T C T A G T A C G A G T C G C T A C T G A A G T C C G A T C A G T G A T C A C G T T A G C
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTTTTGGCAACTTCTC
GTATTGACAGCTNNTT
 A G T C G A C T A G C T A C G T G A C T C T A G T A C G A G T C G C T A C T G A A G T C C G A T C A G T G A T C A C G T T A G C
A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T

PB0003.1_Ascl2_1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTTTTGGCAACTTCTC---
--CTCAGCAGCTGCTACTG
 A G T C G A C T A G C T A C G T G A C T C T A G T A C G A G T C G C T A C T G A A G T C C G A T C A G T G A T C A C G T T A G C A C G T A C G T A C G T
A C G T A C G T A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTTTTGGCAACTTCTC
--NTTGGCANN-----
 A G T C G A C T A G C T A C G T G A C T C T A G T A C G A G T C G C T A C T G A A G T C C G A T C A G T G A T C A C G T T A G C
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CTTTTGGCAACTTCTC
---TTGGCA-------
 A G T C G A C T A G C T A C G T G A C T C T A G T A C G A G T C G C T A C T G A A G T C C G A T C A G T G A T C A C G T T A G C
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:7
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CTTTTGGCAACTTCTC
-----AGCAGCTGCT-
 A G T C G A C T A G C T A C G T G A C T C T A G T A C G A G T C G C T A C T G A A G T C C G A T C A G T G A T C A C G T T A G C
A C G T A C G T A C G T A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTGGCAACTTCTC
ANATTTTTGCAANTN---
 A C G T A C G T A G T C G A C T A G C T A C G T G A C T C T A G T A C G A G T C G C T A C T G A A G T C C G A T C A G T G A T C A C G T T A G C
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTTTTGGCAACTTCTC
-SCCTAGCAACAG---
 A G T C G A C T A G C T A C G T G A C T C T A G T A C G A G T C G C T A C T G A A G T C C G A T C A G T G A T C A C G T T A G C
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T

PH0102.1_Meis1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTTTTGGCAACTTCTC
NTATTGACAGCTNNTT
 A G T C G A C T A G C T A C G T G A C T C T A G T A C G A G T C G C T A C T G A A G T C C G A T C A G T G A T C A C G T T A G C
C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T