Information for 4-AMCTCARYGAGGC (Motif 6)

C G T A T G C A A G T C A C G T A G T C C G T A C T A G A G C T C T A G C G T A A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C G T A G T C C T G A A G T C A C G T A C T G C G T A A C T G A C G T A C G T
p-value:1e-11
log p-value:-2.637e+01
Information Content per bp:1.893
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.0 +/- 20.1bp
Average Position of motif in Background45.5 +/- 17.9bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AMCTCARYGAGGC-----
---SCAGYCADGCATGAC
 C G T A T G C A A G T C A C G T A G T C C G T A C T A G A G C T C T A G C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AMCTCARYGAGGC
-DCTCAGCAGG--
 C G T A T G C A A G T C A C G T A G T C C G T A C T A G A G C T C T A G C G T A A C T G A C T G A G T C
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:3
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AMCTCARYGAGGC-----
NGTGTTCAVTSAAGCGKAAA
 A C G T A C G T C G T A T G C A A G T C A C G T A G T C C G T A C T A G A G C T C T A G C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

PB0005.1_Bbx_1/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AMCTCARYGAGGC-
TAATTCAATGAAGTG
 A C G T C G T A T G C A A G T C A C G T A G T C C G T A C T A G A G C T C T A G C G T A A C T G A C T G A G T C A C G T
G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G

RXRA::VDR/MA0074.1/Jaspar

Match Rank:5
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--AMCTCARYGAGGC
TGAACCCGATGACCC
 A C G T A C G T C G T A T G C A A G T C A C G T A G T C C G T A C T A G A G C T C T A G C G T A A C T G A C T G A G T C
A G C T C T A G C G T A C G T A A G T C A G C T A G T C A C T G C G A T A G C T C T A G C G T A G T A C A G T C A G T C

Vdr/MA0693.1/Jaspar

Match Rank:6
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--AMCTCARYGAGGC-
TGAACTCNATGAACTC
 A C G T A C G T C G T A T G C A A G T C A C G T A G T C C G T A C T A G A G C T C T A G C G T A A C T G A C T G A G T C A C G T
G A C T T C A G T G C A T G C A G A T C A G C T A G T C C T G A C T G A G A C T T C A G T G C A T G C A G T A C A G C T A G T C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.51
Offset:3
Orientation:forward strand
Alignment:AMCTCARYGAGGC------
---GCAGCCAAGCGTGACN
 C G T A T G C A A G T C A C G T A G T C C G T A C T A G A G C T C T A G C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:AMCTCARYGAGGC--
-------CTAGGCCT
 C G T A T G C A A G T C A C G T A G T C C G T A C T A G A G C T C T A G C G T A A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

PAX5/MA0014.2/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-AMCTCARYGAGGC-----
GAGGGCAGCCAAGCGTGAC
 A C G T C G T A T G C A A G T C A C G T A G T C C G T A C T A G A G C T C T A G C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:10
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--AMCTCARYGAGGC-
GTAGGTCACTGGGTCA
 A C G T A C G T C G T A T G C A A G T C A C G T A G T C C G T A C T A G A G C T C T A G C G T A A C T G A C T G A G T C A C G T
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A