Information for 4-CCTCTTGAGTAGC (Motif 6)

A G T C A G T C A C G T A G T C A G C T A C G T A C T G G T C A A C T G A C G T C T G A A C T G A G T C
Reverse Opposite:
A C T G A G T C A G C T C G T A G T A C A C G T A G T C C G T A C T G A A C T G C G T A A C T G A C T G
p-value:1e-10
log p-value:-2.481e+01
Information Content per bp:1.939
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.6 +/- 34.6bp
Average Position of motif in Background40.6 +/- 3.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CCTCTTGAGTAGC-
---CTTGAGTGGCT
 A G T C A G T C A C G T A G T C A G C T A C G T A C T G G T C A A C T G A C G T C T G A A C T G A G T C A C G T
A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCTCTTGAGTAGC
NSCACTYVAV----
 A C G T A G T C A G T C A C G T A G T C A G C T A C G T A C T G G T C A A C T G A C G T C T G A A C T G A G T C
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCTCTTGAGTAGC
ACCACTTGAA----
 A C G T A G T C A G T C A C G T A G T C A G C T A C G T A C T G G T C A A C T G A C G T C T G A A C T G A G T C
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCTCTTGAGTAGC
ATAACCACTTGAAAATT
 A C G T A C G T A C G T A C G T A G T C A G T C A C G T A G T C A G C T A C G T A C T G G T C A A C T G A C G T C T G A A C T G A G T C
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CCTCTTGAGTAGC
---CTYRAGTGSY
 A G T C A G T C A C G T A G T C A G C T A C G T A C T G G T C A A C T G A C G T C T G A A C T G A G T C
A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

NKX2-8/MA0673.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCTCTTGAGTAGC
CCACTTGAA----
 A G T C A G T C A C G T A G T C A G C T A C G T A C T G G T C A A C T G A C G T C T G A A C T G A G T C
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T A C G T A C G T

PB0154.1_Osr1_2/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCTCTTGAGTAGC----
-NNNTTAGGTAGCNTNT
 A G T C A G T C A C G T A G T C A G C T A C G T A C T G G T C A A C T G A C G T C T G A A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C T G C A G T G C T A C A G T A G C T C G T A C T A G A C T G C G A T C T G A C T A G A G T C C T G A C G A T C T A G G A C T

PH0171.1_Nkx2-1/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCTCTTGAGTAGC
TAAGCCACTTGAAATT-
 A C G T A C G T A C G T A C G T A G T C A G T C A C G T A G T C A G C T A C G T A C T G G T C A A C T G A C G T C T G A A C T G A G T C
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTTGAGTAGC
CCACCTGTTGCAT---
 A C G T A C G T A C G T A G T C A G T C A C G T A G T C A G C T A C G T A C T G G T C A A C T G A C G T C T G A A C T G A G T C
T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T A C G T A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCTCTTGAGTAGC
TAAGCCACTTGAATTT-
 A C G T A C G T A C G T A C G T A G T C A G T C A C G T A G T C A G C T A C G T A C T G G T C A A C T G A C G T C T G A A C T G A G T C
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T A C G T