Information for 2-GGCAAAAACCCGCGGC (Motif 4)

A T C G A C T G A T G C G T C A C G T A G T C A C G T A C G T A T A G C G T A C A G T C A C T G A G T C A C T G C T A G A G T C
Reverse Opposite:
C T A G A G T C A G T C A C T G G T A C A C T G A C T G A T C G C G A T C G A T A C G T A C G T A C G T A T C G G T A C A T G C
p-value:1e-11
log p-value:-2.594e+01
Information Content per bp:1.773
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.6 +/- 21.3bp
Average Position of motif in Background33.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGCAAAAACCCGCGGC
-GGAAATCCCC-----
 A T C G A C T G A T G C G T C A C G T A G T C A C G T A C G T A T A G C G T A C A G T C A C T G A G T C A C T G C T A G A G T C
A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:2
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GGCAAAAACCCGCGGC
-AGCAACAGCCGCACC
 A T C G A C T G A T G C G T C A C G T A G T C A C G T A C G T A T A G C G T A C A G T C A C T G A G T C A C T G C T A G A G T C
A C G T T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:3
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GGCAAAAACCCGCGGC
-GGAAATTCCC-----
 A T C G A C T G A T G C G T C A C G T A G T C A C G T A C G T A T A G C G T A C A G T C A C T G A G T C A C T G C T A G A G T C
A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:GGCAAAAACCCGCGGC
-GGAAATTCCC-----
 A T C G A C T G A T G C G T C A C G T A G T C A C G T A C G T A T A G C G T A C A G T C A C T G A G T C A C T G C T A G A G T C
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GGCAAAAACCCGCGGC
GGGAAATCCCCN----
 A T C G A C T G A T G C G T C A C G T A G T C A C G T A C G T A T A G C G T A C A G T C A C T G A G T C A C T G C T A G A G T C
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GGCAAAAACCCGCGGC
-GGAAANCCCC-----
 A T C G A C T G A T G C G T C A C G T A G T C A C G T A C G T A T A G C G T A C A G T C A C T G A G T C A C T G C T A G A G T C
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T A C G T A C G T

PB0024.1_Gcm1_1/Jaspar

Match Rank:7
Score:0.49
Offset:3
Orientation:forward strand
Alignment:GGCAAAAACCCGCGGC---
---TCGTACCCGCATCATT
 A T C G A C T G A T G C G T C A C G T A G T C A C G T A C G T A T A G C G T A C A G T C A C T G A G T C A C T G C T A G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T

RUNX2/MA0511.2/Jaspar

Match Rank:8
Score:0.47
Offset:6
Orientation:forward strand
Alignment:GGCAAAAACCCGCGGC
------AAACCGCAA-
 A T C G A C T G A T G C G T C A C G T A G T C A C G T A C G T A T A G C G T A C A G T C A C T G A G T C A C T G C T A G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A G T C A A G T C A G T C C T A G A G T C T G C A T C G A A C G T

GLIS2/MA0736.1/Jaspar

Match Rank:9
Score:0.46
Offset:6
Orientation:forward strand
Alignment:GGCAAAAACCCGCGGC----
------GACCCCCCGCGAAG
 A T C G A C T G A T G C G T C A C G T A G T C A C G T A C G T A T A G C G T A C A G T C A C T G A G T C A C T G C T A G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C G A A G T C G T A C G A T C G T A C G T A C G A T C C T A G A G T C C T A G C T G A G T C A A T C G

PB0145.1_Mafb_2/Jaspar

Match Rank:10
Score:0.46
Offset:-4
Orientation:forward strand
Alignment:----GGCAAAAACCCGCGGC
CAATTGCAAAAATAT-----
 A C G T A C G T A C G T A C G T A T C G A C T G A T G C G T C A C G T A G T C A C G T A C G T A T A G C G T A C A G T C A C T G A G T C A C T G C T A G A G T C
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T A C G T A C G T A C G T A C G T A C G T