Information for 1-CTGTGGAGAC (Motif 3)

A G T C C G A T A T C G A G C T A C T G A C T G C T G A A T C G G C T A A G T C
Reverse Opposite:
T C A G C G A T A T G C A G C T T G A C G T A C C T G A T A G C C G T A C T A G
p-value:1e-11
log p-value:-2.691e+01
Information Content per bp:1.696
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif6.96%
Number of Background Sequences with motif1039.9
Percentage of Background Sequences with motif2.16%
Average Position of motif in Targets54.6 +/- 25.8bp
Average Position of motif in Background50.3 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF354C/MA0130.1/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CTGTGGAGAC
--GTGGAT--
 A G T C C G A T A T C G A G C T A C T G A C T G C T G A A T C G G C T A A G T C
A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTGTGGAGAC
GCTGTG-----
 A C G T A G T C C G A T A T C G A G C T A C T G A C T G C T G A A T C G G C T A A G T C
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGTGGAGAC-
-TGTCTAGACG
 A G T C C G A T A T C G A G C T A C T G A C T G C T G A A T C G G C T A A G T C A C G T
A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CTGTGGAGAC---
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T A C G T A G T C C G A T A T C G A G C T A C T G A C T G C T G A A T C G G C T A A G T C A C G T A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGTGGAGAC
GCTGTGGTTT-
 A C G T A G T C C G A T A T C G A G C T A C T G A C T G C T G A A T C G G C T A A G T C
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CTGTGGAGAC----
CAGATGTGCACATACGT
 A C G T A C G T A C G T A G T C C G A T A T C G A G C T A C T G A C T G C T G A A T C G G C T A A G T C A C G T A C G T A C G T A C G T
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGTGGAGAC-
NNTGTGGATTSS
 A C G T A G T C C G A T A T C G A G C T A C T G A C T G C T G A A T C G G C T A A G T C A C G T
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G

FOXH1/MA0479.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTGTGGAGAC--
-TGTGGATTNNN
 A G T C C G A T A T C G A G C T A C T G A C T G C T G A A T C G G C T A A G T C A C G T A C G T
A C G T C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A

PB0104.1_Zscan4_1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CTGTGGAGAC----
TACATGTGCACATAAAA
 A C G T A C G T A C G T A G T C C G A T A T C G A G C T A C T G A C T G C T G A A T C G G C T A A G T C A C G T A C G T A C G T A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTGTGGAGAC
NNHTGTGGTTWN
 A C G T A C G T A G T C C G A T A T C G A G C T A C T G A C T G C T G A A T C G G C T A A G T C
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G