Information for 5-GTCTCGSTCGTGG (Motif 10)

A C T G A G C T G T A C A C G T A G T C A C T G A T G C G A C T A G T C A T C G A G C T A C T G A C T G
Reverse Opposite:
A G T C A G T C T C G A A T G C A C T G C G T A A T C G A G T C A C T G C G T A C A T G C T G A A G T C
p-value:1e-10
log p-value:-2.316e+01
Information Content per bp:1.835
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.13%
Number of Background Sequences with motif104.2
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets50.5 +/- 23.7bp
Average Position of motif in Background46.7 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTCTCGSTCGTGG-
GTCACGCTCNCTGA
 A C T G A G C T G T A C A C G T A G T C A C T G A T G C G A C T A G T C A T C G A G C T A C T G A C T G A C G T
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

PB0036.1_Irf6_1/Jaspar

Match Rank:2
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------GTCTCGSTCGTGG
NNNTTGGTTTCGNTNNN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T G T A C A C G T A G T C A C T G A T G C G A C T A G T C A T C G A G C T A C T G A C T G
G C T A G T A C G C A T A C G T A G C T C T A G A C T G A C G T G C A T A C G T A G T C C T A G C T G A G A C T G A T C G C T A C A T G A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GTCTCGSTCGTGG
CTGTCTGTCACCT--
 A C G T A C G T A C T G A G C T G T A C A C G T A G T C A C T G A T G C G A C T A G T C A T C G A G C T A C T G A C T G
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GTCTCGSTCGTGG
TGTCTGDCACCT--
 A C G T A C T G A G C T G T A C A C G T A G T C A C T G A T G C G A C T A G T C A T C G A G C T A C T G A C T G
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

Mycn/MA0104.3/Jaspar

Match Rank:5
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:GTCTCGSTCGTGG-
------CACGTGGC
 A C T G A G C T G T A C A C G T A G T C A C T G A T G C G A C T A G T C A T C G A G C T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C T G A T C G G A T C

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GTCTCGSTCGTGG
AGTATTCTCGGTTGC--
 A C G T A C G T A C G T A C G T A C T G A G C T G T A C A C G T A G T C A C T G A T G C G A C T A G T C A T C G A G C T A C T G A C T G
T C A G T A C G A G C T G C T A G A C T C A G T G A T C A G C T G A T C T C A G T C A G C G A T G A C T C A T G A T G C A C G T A C G T

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:GTCTCGSTCGTGG-
------CACGTGGN
 A C T G A G C T G T A C A C G T A G T C A C T G A T G C G A C T A G T C A T C G A G C T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T A C C T G A A G T C C T A G G A C T A C T G A T C G A G C T

PB0140.1_Irf6_2/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GTCTCGSTCGTGG
ACCACTCTCGGTCAC--
 A C G T A C G T A C G T A C G T A C T G A G C T G T A C A C G T A G T C A C T G A T G C G A C T A G T C A T C G A G C T A C T G A C T G
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C A C G T A C G T

PB0035.1_Irf5_1/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GTCTCGSTCGTGG
NTGGTTTCGGTTNNN-
 A C G T A C G T A C G T A C T G A G C T G T A C A C G T A G T C A C T G A T G C G A C T A G T C A T C G A G C T A C T G A C T G
A G C T G A C T C T A G A C T G A C G T G C A T A G C T A G T C C T A G C T A G G A C T G C A T G A C T G C T A C G A T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:10
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GTCTCGSTCGTGG
-----GGACGTGC
 A C T G A G C T G T A C A C G T A G T C A C T G A T G C G A C T A G T C A T C G A G C T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C