Information for 3-CGGGCAGGATGCC (Motif 6)

A G T C A C T G A C T G A C T G A G T C C G T A A T C G A C T G C G T A C G A T A C T G A G T C A G T C
Reverse Opposite:
C T A G A C T G A G T C C G T A A C G T A G T C A T G C A C G T A C T G A G T C G T A C A G T C A C T G
p-value:1e-12
log p-value:-2.771e+01
Information Content per bp:1.913
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.2 +/- 29.1bp
Average Position of motif in Background69.1 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CGGGCAGGATGCC-
CTGGCAGNCTGCCA
 A G T C A C T G A C T G A C T G A G T C C G T A A T C G A C T G C G T A C G A T A C T G A G T C A G T C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGGGCAGGATGCC---
TTGGCANNNTGCCAAG
 A G T C A C T G A C T G A C T G A G T C C G T A A T C G A C T G C G T A C G A T A C T G A G T C A G T C A C G T A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CGGGCAGGATGCC--
-TGGCACCATGCCAA
 A G T C A C T G A C T G A C T G A G T C C G T A A T C G A C T G C G T A C G A T A C T G A G T C A G T C A C G T A C G T
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CGGGCAGGATGCC
--ANCAGGATGT-
 A G T C A C T G A C T G A C T G A G T C C G T A A T C G A C T G C G T A C G A T A C T G A G T C A G T C
A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CGGGCAGGATGCC
TNNGGGCAG------
 A C G T A C G T A G T C A C T G A C T G A C T G A G T C C G T A A T C G A C T G C G T A C G A T A C T G A G T C A G T C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CGGGCAGGATGCC-
--NDCAGGAARTNN
 A G T C A C T G A C T G A C T G A G T C C G T A A T C G A C T G C G T A C G A T A C T G A G T C A G T C A C G T
A C G T A C G T T G C A C T G A T A G C G T C A A C T G A C T G C G T A G C T A T C A G G A C T T C A G T A C G

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CGGGCAGGATGCC---
-GGTCANNGTGACCTN
 A G T C A C T G A C T G A C T G A G T C C G T A A T C G A C T G C G T A C G A T A C T G A G T C A G T C A C G T A C G T A C G T
A C G T C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CGGGCAGGATGCC
---ACAGGAAGTG
 A G T C A C T G A C T G A C T G A G T C C G T A A T C G A C T G C G T A C G A T A C T G A G T C A G T C
A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

E2F6/MA0471.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CGGGCAGGATGCC
-GGGCGGGAAGG-
 A G T C A C T G A C T G A C T G A G T C C G T A A T C G A C T G C G T A C G A T A C T G A G T C A G T C
A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G A C G T

HIC2/MA0738.1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CGGGCAGGATGCC
NGTGGGCAT------
 A C G T A C G T A G T C A C T G A C T G A C T G A G T C C G T A A T C G A C T G C G T A C G A T A C T G A G T C A G T C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T